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. 2013 Nov 12;82(6):1048–1059. doi: 10.1002/prot.24477

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© 2013 The Authors. Proteins: Structure, Function, and Bioinformatics Published by Wiley Periodicals, Inc.

This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.

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Definition of the binding pocket size. (A) Binding free energy decomposed at residue level for P_II protein. (B) Hydrogen bonds interactions (dashed lines) between Gln39, Lys58, Gly87, and 2-OG. Definition of binding pocket size by d₁, d₂ and d₃ with (C) or without (D) the binding of 2-OG. [Color figure can be viewed in the online issue, which is available at wileyonlinelibrary.com.]