Skip to main content
. 2014 Oct 28;11:188. doi: 10.1186/1743-422X-11-188

Table 2.

Yersiniophage AP5 gene annotations

Gene name ORF Product Start (bp) Stop (bp) pI Protein mass (Da) Function or Similarity Evidence or Organism Homolog (Accession number) Id (%) BlastP E-value
- - regulatory element 1 235 - - terminal repeat - - - -
- - regulatory element 550 580 - - promoter (sequence similarity to host promoter) - - - -
0.3 ORF1 S-adenosyl-L-methionine hydrolase 1,017 1,475 5.94 17171.56 DNA replication, repair and nucleotide metabolism Yersinia phage phiYeO3-12 NP_052065 92.1 1.94e-101
0.6 ORF2 hypothetical protein 1,748 1,951 10.5 7878.43 unknown Yersinia phage phiYeO3-12 NP_052068 98.5 2.31e-39
0.65 ORF3 hypothetical protein 1,938 2,108 11.4 6546.78 unknown Enterobacteria phage T3 NP_523299 98.0 1.98e-27
0.7 ORF4 protein kinase 2,123 3,232 7.19 42424.34 host transcription shutoff and Col Ib exclusion Salmonella phage phiSG-JL2 YP_001949749 93.2 0
1 ORF5 RNA polymerase 3,303 5,957 7.10 98841.61 RNA replication, transcription and modification Enterobacteria phage T3 NP_523301 99.3 0
1.05 ORF6 hypothetical protein 6,044 6,316 9.22 10529.28 unknown Enterobacteria phage T3 NP_523302 92.2 2.75e-53
1.1 ORF7 hypothetical protein 6,409 6,549 10.93 5887.54 unknown Yersinia phage phiYeO3-12 NP_052073 95.7 1.26e-22
1.2 ORF8 deoxyguanosine triphospho-hydrolase inhibitor 6,549 6,824 7.01 10433.64 hydrolyzes dGTP and may affect cellular pool of dGTP Salmonella phage phiSG-JL2 YP_001949753 97.8 5.40e-60
1.3 ORF9 DNA ligase 6,919 7,965 5.16 39618.14 DNA replication, recombination, and repair Salmonella phage phiSG-JL2 YP_001949754 92.5 0
1.6 ORF10 hypothetical protein 8,135 8,392 11.20 9893.68 unknown Yersinia phage phiYeO3-12 NP_052078 100 1.26e-53
1.7 ORF11 hypothetical protein 8,392 8,871 9.38 17869.64 unknown Yersinia phage phiYeO3-12 NP_052079 84.9 7.83e-95
1.8 ORF12 hypothetical protein 8,858 8,995 5.14 5267.92 unknown Yersinia phage phiYeO3-12 NP_052080 100 2.81e-23
2 ORF13 Host RNA polymerase inhibitor 8,992 9,228 4.85 8839.87 inhibition of host RNA Polymerase Salmonella phage phiSG-JL2 YP_001949759 100 2.40e-27
2.5 ORF14 ssDNA binding protein 9,281 9,979 4.80 25965.80 helix-destabilizing protein Yersinia phage phiYeO3-12 NP_052082 98.7 2.40e-167
3 ORF15 endonuclease 9,979 10,440 9.58 17725.54 endonuclease I Enterobacteria phage T7M AFQ97046 98.0 1.14e-103
3.5 ORF16 endolysin 10,433 10,888 9.03 16900.28 N-acetylmuramoyl-L-alanine amidase Yersinia phage phiYeO3-12 NP_052084 100 9.21e-109
4 ORF17 primase/helicase 11,255 12,769 5.11 55882.14 DNA replication Yersinia phage phiYeO3-12 NP_052088 99.8 0
4.3 ORF18 hypothetical protein 12,865 13,077 10.00 7762.16 unknown Enterobacteria phage T3 NP_523318 98.6 3.66e-39
4.5 ORF19 hypothetical protein 13,090 13,374 9.89 10749.39 unknown Yersinia phage phiYeO3-12 NP_052092 100 1.26e-62
5 ORF20 DNA polymerase 13,442 15,556 6.42 79875.05 DNA replication Salmonella phage phiSG-JL2 YP_001949769 99.0 0
5.5 ORF21 hypothetical protein 15,573 15,869 5.53 11022.78 unknown Klebsiella phage KP32 YP_003347541 58.3 7.72e-25
5.7 ORF22 hypothetical protein 15,866 16,075 9.81 7260.42 unknown Yersinia phage phiYeO3-12 NP_052098 100 5.77e-42
5.9 ORF23 host recBCD nuclease inhibitor 16,072 16,254 3.1 6742.48 Inhibits host recBCD nuclease Yersinia phage phiYeO3-12 NP_072071 98.3 1.08e-33
6 ORF24 exonuclease 16,251 17,162 4.98 34799.67 DNA Replication, repair, and recombination Yersinia phage phiYeO3-12 NP_052100 99.3 0
6.3 ORF25 hypothetical protein 17,144 17,257 9.69 4111.08 unknown Yersinia phage phiYeO3-12 NP_052102 97.3 8.79e-15
6.5 ORF26 hypothetical protein 17,401 17,595 6.57 7458.47 unknown Yersinia phage phiYeO3-12 NP_052103 100 6.28e-38
6.7 ORF27 hypothetical protein 17,600 17,851 9.13 8833.96 unknown Enterobacteria phage T3 NP_523330 98.8 1.76e-49
7.3 ORF28 tail assembly protein 17,879 18,199 9.78 11003.70 scaffolding protein required for the assembly of tail fibers on capsids Salmonella phage phiSG-JL2 YP_001949779 95.3 2.72e-39
8 ORF29 head to tail joining protein 18,210 19,817 4.54 58649.37 bacteriophage head to tail connecting protein Yersinia phage phiYeO3-12 NP_052106 100 0
9 ORF30 capsid assembly protein 19,919 20,851 4.24 33787.57 scaffolding protein required for the formation of pro-capsids. Salmonella phage phiSG-JL2 YP_001949781 98.4 0
10A ORF31 major capsid protein 21,008 22,054 7.11 36954.20 scaffolding protein Yersinia phage phiYeO3-12 NP_052108 99.1 0
10B ORF32 minor capsid protein 22,066 22,188 6.10 4295.84 scaffolding protein Salmonella phage phiSG-JL2 YP_001949782 95.0 2.23e-15
11 ORF33 tail tubular protein A 22,270 22,860 4.48 22233.69 required for assembly of tails of T7-like phages Yersinia phage phiYeO3-12 NP_052110 100 1.00e-141
12 ORF34 tail tubular protein B 22,876 25,281 6.11 89771.51 required for assembly of tails of T7-like phages Yersinia phage phiYeO3-12 NP_052111 98.1 0
13 ORF35 internal virion protein A 25,354 25,779 5.37 16473.96 forms internal core of virion Salmonella phage phiSG-JL2 YP_001949786 96.3 5.14e-93
13.5 ORF36 hypothetical protein 25,766 26,155 9.02 14582.99 unknown Yersinia phage phiYeO3-12 NP_072072 73.6 2.87e-59
14 ORF 37 internal virion protein B 26,158 26,751 8.66 21308.02 forms internal core of virion Yersinia phage phiYeO3-12 NP_052114 96.4 1.54e-133
15 ORF38 internal virion protein C 26,754 28,997 5.47 85134.48 forms internal core of virion Salmonella phage phiSG-JL2 YP_001949788 99.3 0
16 ORF39 internal virion protein D 29,016 32,978 8.41 143525.96 forms internal core of virion Yersinia phage phiYeO3-12 NP_052116 98.9 0
17 ORF40 tail fiber protein 33,050 34,996 6.45 69728.57 host recognition binding protein Yersinia phage phiYeO3-12 NP_052117 89.3 0
17.5 ORF41 holin 35,008 35,211 6.08 7360.50 holin, class II Yersinia phage phiYeO3-12 NP_052118 94.0 2.79e-37
18 ORF42 DNA packaging protein A 35,215 35,481 4.70 9888.31 DNA packaging Salmonella phage phiSG-JL2 YP_001949792 100 1.01e-55
18.5 ORF43 Phage λ Rz-like lysis protein (Rz/Rz1 equivalent) 35,570 36,022 9.41 16993.28 host lysis (via Rz/Rz1 spanins disrupting outer membrane) Salmonella phage phiSG-JL2 YP_00194793 98.7 4.69e-105
19 ORF44 DNA packaging protein B 35,997 37,760 5.32 66704.05 DNA packaging Yersinia phage phiYeO3-12 NP_052122 99.8 0
19.5 ORF45 hypothetical protein 38,005 38,154 7.87 5441.55 unknown Yersinia phage phiYeO3-12 NP_052125 98.0 1.78e-24
- - regulatory element 38,412 38,646 - - terminal repeat - - - -

Genes are listed by number, along with their predicted function, if known, followed by the nature of the evidence that supports the functional classification. Genes with no functional prediction, but with significant (E <10-5) sequence similarity to genes in the NCBI database as determined by BLASTP are listed, including the name of the organism in which the similar gene was found.