Table 3.
Predicted promoter sequences of AP5
| Name | Promoter sequence | Number of mismatches † | Transcription | |
|---|---|---|---|---|
| Beginning | End | |||
| ϕGene 0.3 | AATTACCCTCACTAAAGGGAAT | 4 | 475 | 496 |
| ϕGene 1.05 | ATTAACCCTCACTAACGGGAGA | 1 | 5970 | 5991 |
| ϕGene 1.1 | GTTAACCCTCACTAACGGGAGA | 2 | 6312 | 6333 |
| ϕGene 1.3 | AATAACCCTAACTAACAGGAGA | 4 | 6823 | 6844 |
| ϕGene 1.6 | ATTAACCCTCACTAACAGGAGA | 2 | 8015 | 8036 |
| ϕGene 2.5 | AATTACCCTCACTAAAGGGAAC | 4 | 9227 | 9248 |
| ϕGene 4 | ATTAACACTCACTAAAGGGATG | 3 | 11000 | 11021 |
| ϕGene 4.3 | ATTAACCCTCACTAACGGGAAC | 3 | 12818 | 12839 |
| ϕGene 6.5 | ATTAACCCTCACTAAAGGGAAG | 2 | 17277 | 17298 |
| ϕGene 9 | AATAACCATCACTAAATGGAGA | 3 | 19816 | 19837 |
| ϕGene 10A | ATTAACCCTCACTAAAGGGAGA | 0 | 20851 | 20872 |
| ϕGene 13 | ATTAACCCTCACTAAAGGGAGA | 0 | 25303 | 25324 |
| ϕGene 17 | ATAAACCCTCACTAAAGGGAGA | 0 | 32975 | 32996 |
| ϕGene 19.5 | ATTAACCCTCACTAAAGGGAGA | 0 | 37842 | 37863 |
| Consensus sequence | ||||
| AP5 | ATTAACCCTCACTAAAGGGAGA | |||
| φYeO3-12 | ATTAACCCTCACTAAAGGGAGA | |||
| T3 | ATTAACCCTCACTAAAGGGAGA | |||
| T7 | TAATACGACTCACTATAGGGAG | |||
†Number of mismatches compared to AP5 consensus sequence.