Table 1. Thermodynamic Parameters Derived via ITC of Various DNA Sequences with the PhoP Protein.
DNA sequences are aligned, except for RD6m29, in which insertion of two nucleotides between nucleotides c and t in the spacer causes a shift of the second motif. A hyphen represents an invariant base, and a delta (Δ) represents a deletion of the nucleotide at that position.
N is the stoichiometry, referring to the copy number of DNA per PhoP molecule.
Values of TΔS were calculated from the values of Kd and ΔH that were obtained from fitting the ITC titration data with Origin.
N.B. stands for no binding under the assay conditions, with a binding dissociation constant of >10 μM.