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. 2014 Dec 16;5:5495. doi: 10.1038/ncomms6495

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High TE content in TE islands correlates with deviations from the average coverage ratio, very high absolute coverage in both lineages and high numbers of SNV calls. First track: relative TE (blue and orange within TE islands) and exon content (green) per 200 kb. Second track: coverage ratio BR/JP (blue and orange within TE islands). Third track: absolute coverage for BR (top) and JP (bottom). Fourth track: heterozygous SNV calls per kb in BR (top) and JP (bottom) relative to the reference genome. Fifth track: homozygous SNV calls per kb in BR (top) and JP (bottom) relative to the reference genome. Black lines on x axes indicate localization of TE islands.