Table 3.
Allele frequencies pa for HWE | Genotype | Ramosetron Non-responders n=16 | Ramosetron responders n=26 | p values | |
---|---|---|---|---|---|
SLC6A4 5-HTTLPR del(s)/ins(l) | l=0.18, s=0.82 p=0.38 |
ll/ls/ss ss (%) |
0/8/8 50 |
0/7/19 73.1 |
0.13 |
SLC6A4 intron 2 VNTR | 10rep=0.12 12rep=0.88 p =0.69 |
10/12 & 12/12rep | 2/14 | 8/18 | 0.27 |
TPH1 rs4537731 −1066 T > C | T=0.87, C=0.13 p =0.93 |
TT/TC/CC C allele % |
8/7/1 50 |
24/2/0 11.5 |
0.003 |
TPH1 rs7130929 −347 C > A | C=0.87, A=0.13 p =0.93 |
CC/CA/AA A allele % |
8/7/1 50 |
24/2/0 11.5 |
0.003 |
TPH1 rs684302 7465 C > T | C=0.42, T=0.68 p =0.34 |
CC/CT/TT C allele % |
2/7/7 56.2 |
3/10/13 50 |
0.69 |
TPH1 rs211105 12517 T > G | T=0.89, G=0.11 p =0.58 |
TT/GT/GG G allele % |
9/6/1 43.8 |
25/1/0 3.8 |
0.003 |
TPH1 rs1800532 218 G>T | G=0.33, T=0.67 p =0.66 |
GG/GT/TT T allele % |
3/6/7 56.2 |
13/10/3 50 |
0.69 |
TPH1 rs1799913 779 G > T | G=0.32, T=0.68, p =0.90 | GG/GT/TT G allele % |
2/7/7 56.2 |
13/10/3 50 |
0.69 |
TPH2 rs4570625 −709 G > T | G=0.49 T=0.51 p =0.18 |
GG/GT/TT G allele % |
3/11/2 87.5 |
4/16/6 76.9 |
0.69 |
p Values by the chi-square test
Hardy-Weinberg equilibrium (HWE) of allele frequencies at individual loci was assessed by comparing the observed and expected genotype frequencies.