Table 4.
Nucleotide content and gene count levels of the genome
|
Attribute |
|
Genome (total) |
|---|---|---|
| Value | % of total | |
| Genome size (bp) |
3,554,760 |
- |
| DNA coding (bp) |
3,153,982 |
88.73 |
| DNA G+C (bp) |
2,289,453 |
66.41 |
| DNA scaffolds |
2 |
- |
| Total genes |
3,392 |
- |
| Protein coding genes |
3,325 |
98.02 |
| RNA genes |
67 |
1.98 |
| Genes with function prediction |
2,916 |
85.97 |
| Genes assigned to COGs |
2,764 |
81.49 |
| 1 or more conserved domains |
2,764 |
81.49 |
| 2 or more conserved domains |
329 |
9.70 |
| 3 or more conserved domains |
74 |
2.18 |
| 4 or more conserved domains |
23 |
0.68 |
| Genes with Pfam domains |
2,188 |
64.50 |
| Genes with signal peptides |
180 |
5.31 |
| Genes with transmembrane helices |
697 |
20.55 |
| CRISPR repeats | 1 | - |