Table 1.
| Residue | CDR[c] | H bond[d] | vdW[e] | electrostatic | Polar desolvation |
Nonpolar desolvation |
Total |
|---|---|---|---|---|---|---|---|
| Protein | |||||||
| Trp33 | H1 | Y | −4.2 | −2.4 | 1.6 | −0.5 | −5.5 |
| Tyr98 | H3 | Y | −4.6 | −3.8 | 4.1 | −0.8 | −5.0 |
| Asp91 | L3 | Y | 0.6 | −16.7 | 13.5 | −0.1 | −2.5 |
| His35 | H1 | Y | −0.1 | −3.4 | 1.2 | 0.0 | −2.4 |
| Asn97 | H3 | Y | −2.8 | −2.6 | 4.2 | −0.3 | −1.5 |
| Ser50 | H2 | Y | −0.1 | −2.1 | 0.8 | 0.0 | −1.5 |
| Tyr96 | L3 | Y | −1.0 | −0.8 | 1.0 | −0.1 | −0.9 |
| Asn58 | H2 | Y | −0.6 | −0.7 | 0.7 | −0.1 | −0.6 |
| Phe95 | H3 | N | −3.7 | −0.2 | 0.5 | −0.4 | −3.8 |
| Val99 | H3 | N | −1.9 | −0.3 | 0.7 | −0.1 | −1.5 |
| Tyr50 | L2 | N | −1.9 | 0.4 | 0.3 | −0.2 | −1.5 |
| Pro100 | H3 | N | −1.2 | 0.4 | −0.3 | 0.0 | −1.2 |
| Pro94 | L3 | N | −1.0 | −0.2 | 0.3 | −0.1 | −1.1 |
| Tyr49 | L2 | N | −0.9 | −0.2 | 0.2 | 0.0 | −0.9 |
| Tyr32 | L1 | N | −1.1 | 0.2 | 0.4 | −0.1 | −0.6 |
| Tyr52 | H2 | N | −0.5 | −0.3 | 0.4 | −0.1 | −0.5 |
| Gly96 | H3 | N | −0.8 | −0.6 | 0.9 | 0.0 | −0.5 |
| subtotal | −25.8 | −33.3 | 30.5 | −2.9 | −31.5 | ||
| Ligand | |||||||
| A | – | Y | −10.7 | −29.7 | 27.5 | −1.9 | −14.9 |
| B | – | N | −5.4 | −11.0 | 11.9 | −0.5 | −5.1 |
| E | – | Y | −7.4 | −1.8 | 5.5 | −1.4 | −5.1 |
| D | – | N | −2.8 | −1.2 | 3.3 | −0.6 | −1.3 |
| C | – | Y | −3.6 | −0.6 | 3.4 | −0.3 | −1.0 |
| F | – | N | −0.6 | 7.4 | −6.5 | −0.1 | 0.1 |
| subtotal | −30.6 | −36.9 | 45.1 | −4.8 | −27.2 |
In kcalmol−1.
Residues that contribute greater than 0.5 kcalmol−1 to the total binding energy.
Complementarity determining regions.
Intermolecular hydrogen bonds observed, based on a distance cut-off of 3.5 Å.
vdW: van der Waals.