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. Author manuscript; available in PMC: 2015 Jan 12.
Published in final edited form as: Chemistry. 2014 Nov 20;21(3):1138–1148. doi: 10.1002/chem.201405259

Table 1.

Average per-residue energy[a] contributions for key[b] residues in the protein and the ligand.

Residue CDR[c] H bond[d] vdW[e] electrostatic Polar
desolvation
Nonpolar
desolvation
Total
Protein
Trp33 H1 Y −4.2 −2.4 1.6 −0.5 −5.5
Tyr98 H3 Y −4.6 −3.8 4.1 −0.8 −5.0
Asp91 L3 Y 0.6 −16.7 13.5 −0.1 −2.5
His35 H1 Y −0.1 −3.4 1.2 0.0 −2.4
Asn97 H3 Y −2.8 −2.6 4.2 −0.3 −1.5
Ser50 H2 Y −0.1 −2.1 0.8 0.0 −1.5
Tyr96 L3 Y −1.0 −0.8 1.0 −0.1 −0.9
Asn58 H2 Y −0.6 −0.7 0.7 −0.1 −0.6
Phe95 H3 N −3.7 −0.2 0.5 −0.4 −3.8
Val99 H3 N −1.9 −0.3 0.7 −0.1 −1.5
Tyr50 L2 N −1.9 0.4 0.3 −0.2 −1.5
Pro100 H3 N −1.2 0.4 −0.3 0.0 −1.2
Pro94 L3 N −1.0 −0.2 0.3 −0.1 −1.1
Tyr49 L2 N −0.9 −0.2 0.2 0.0 −0.9
Tyr32 L1 N −1.1 0.2 0.4 −0.1 −0.6
Tyr52 H2 N −0.5 −0.3 0.4 −0.1 −0.5
Gly96 H3 N −0.8 −0.6 0.9 0.0 −0.5
subtotal −25.8 −33.3 30.5 −2.9 −31.5
Ligand
A Y −10.7 −29.7 27.5 −1.9 −14.9
B N −5.4 −11.0 11.9 −0.5 −5.1
E Y −7.4 −1.8 5.5 −1.4 −5.1
D N −2.8 −1.2 3.3 −0.6 −1.3
C Y −3.6 −0.6 3.4 −0.3 −1.0
F N −0.6 7.4 −6.5 −0.1 0.1
subtotal −30.6 −36.9 45.1 −4.8 −27.2
[a]

In kcalmol−1.

[b]

Residues that contribute greater than 0.5 kcalmol−1 to the total binding energy.

[c]

Complementarity determining regions.

[d]

Intermolecular hydrogen bonds observed, based on a distance cut-off of 3.5 Å.

[e]

vdW: van der Waals.