(A) Apparent overlap between VGlut1 (green) and VGlut2 (red) by light microscopy appears as yellow puncta (arrows). Representative images show VGlut puncta at P15 and P25 in both WT and hevin KO. Scale bar, 5 µm. (B) Quantification of the apparent overlap in VGlut1/VGlut2 puncta, which is decreased between P15 and P25 in the WT. In the hevin KO, the VGlut1/VGlut2 overlap is slightly decreased at P15 but is unchanged as development continues to P25, at which point it is significantly higher than WT (n = 3 z-stacks per animal, 3–4 animals per genotype; *p < 0.01, **p < 0.05, nested ANOVA). (C) To show that the apparent overlap in VGlut1 and VGlut2 puncta was not due to random chance in densely stained tissue, confocal Z-stacks were split into two channels (VGlut1 and VGlut2), the VGlut2 channel was rotated 90° out of alignment, then the two channels were re-merged and analyzed for apparent co-localization of presynaptic puncta. For all conditions analyzed, overlap frequency was significantly decreased in the rotated image (red) compared to the original unrotated image (black) (n = 3 z-stacks per animal, 3–4 animals per genotype; p < 0.01, Student's t test). (D) Representative SIM image of VGlut1 (green)/VGlut2 (red)-stained S/Z in P15 WT cortex. At the high resolution afforded by SIM (∼100 nm), VGlut1 and VGlut2 presynaptic puncta do not appear co-localized. Scale bar, 5 µm. (E) Scatterplot showing the apparent overlap in VGlut1/VGlut2 puncta at differing co-localization distance thresholds. When the limit of co-localization is 100 nm between puncta, approaching the resolution of SIM, virtually no co-localization is detected. By increasing the allowable distance between co-localized puncta (closer to the resolution of confocal microscopy), VGlut1/VGlut2 overlap frequency eventually approaches the levels previously detected by confocal imaging (n = 3–4 Z-stacks each from 3 animals).