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. Author manuscript; available in PMC: 2015 Jan 8.
Published in final edited form as: Obesity (Silver Spring). 2012 Mar 29;20(10):2083–2092. doi: 10.1038/oby.2012.74

Table 4. Characteristics of the SNPs near or in CD36 and GNAT3 genes and their association with MS (NCEP/ATPIII).

Gene SNP Major/minor alleles* Physical distance (bp)* Location* Minor allele frequency (MAF) P-value
GNAT3 SNP1 (rs799975) G/C 79920950 downstream of 3′-UTR 0.228 0.0414
SNP2 (rs2944398)a C/T 79924797 near 3′-UTR 0.425 0.0326
SNP3 (rs6942728) T/C 79932864 intron 0.048 0.0437
SNP4 (rs1473122)a A/T 79933295 intron 0.380 0.0271
SNP5 (rs799929)a A/G 79935512 intron 0.403 0.0737
SNP6 (rs6961082) C/A 79938905 intron 0.012 0.4313
SNP7 (rs11760281) G/A 79942485 intron 0.442 0.0003
SNP8 (rs10280807) T/C 79946464 intron 0.093 0.5679
SNP9 (rs6467212)b A/G 79955940 intron 0.060 0.4319
SNP10 (rs10234980) C/T 79958990 intron 0.035 0.8846
SNP11 (rs1524600)b C/T 79976239 intron 0.067 0.5536
CD36 SNP1 (rs1194197) T/C 80013542 upstream of 5′-UTR1 0.476 0.0044
SNP2 (rs1194182)c G/C 80069440 5′-UTR1 0.375 0.0164
SNP3 (rs1984112) A/G 80080856 Intron1 0.266 0.2819
SNP4 (rs1761667)c A/G 80082875 intron1 0.378 0.0431
SNP5 (rs57312550)d C/A 80090631 intron1 0.070 0.4929
SNP6 (rs59637606)d A/G 80090743 intron1 0.070 0.5638
SNP7 (rs62461694) T/C 80090989 intron1 0.043 0.6636
SNP8 (rs2151916)e T/C 80091319 intron1 0.272 0.4414
SNP9 (rs2366855)f A/T 80091391 intron1 0.445 0.0898
SNP10 (new) G/T 80105623 near 5′-UTR2 0.022 0.5163
SNP11 (rs1049654)f C/A 80113391 5′-UTR2 0.413 0.2377
SNP12 (rs3211805)g G/T 80113512 intron1 & 2 0.004 0.4243
SNP13 (rs997906)e A/T 80117771 intron1 & 2 0.244 0.8259
SNP14 (rs3173798) T/C 80123786 intron1 & 2 0.145 0.0481
SNP15 (rs3211891)g T/C 80128284 intron1 & 2 0.004 0.4248
SNP16 (rs3211956) T/G 80141698 near 3′-UTR1; intron2 0.056 0.2740
SNP17 (rs7755)h G/A 80144207 3′-UTR2 0.324 0.5031
SNP18 (rs1049673)h C/G 80144286 3′-UTR2 0.318 0.3493
*

(NCBI build36; dbSNP BUILD127);

1

Transscript NM_001001547.1,

2

Transscript NM_001001548.2;

a

Three markers are in strong LD with each other (r2 ≥ 0.84);

b

Two markers are in strong LD with each other (r2 = 0.90);

c

Two markers are in strong LD with each other (r2 = 0.97);

d

Two markers are in strong LD with each other (r2 = 1.00);

e

Two markers are in strong LD with each other (r2 = 0.86);

f

Two markers are in strong LD with each other (r2 = 0.88);

g

Two markers are in strong LD with each other (r2 = 1.00);

h

Two markers are in strong LD with each other (r2 = 0.99)