Table 5. Spoligotyping profiles of M. africanum isolates from patients of Ewe ethnicity.
Species | SNP | RD726 | RD711 | RD702 | Spoligotyping profile | Sub-lineagea | SIT | No | % |
Mafric | L5 | ND | Del | Undel | ▪▪▪▪▪▪▪□□□□□▪▪▪▪□□□□□□□□▪▪□□□□□▪▪▪▪▪□□□▪▪▪▪ | WA I | 2 | 8.8 | |
Mafric | L5 | ND | Del | Undel | ▪▪▪▪▪▪▪□□□□□□□▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□□□▪▪▪▪ | WA I | 438 | 5 | 21.7 |
Mafric | L5 | ND | Del | Undel | ▪▪▪▪▪▪▪▪□□□□□▪▪▪▪▪▪▪▪□□□□▪▪▪▪▪▪▪▪▪▪▪□□□▪▪▪▪ | WA I | 331 | 7 | 30.4 |
Mafric | L5 | ND | Del | Undel | ▪□▪▪▪▪▪▪□□□□□▪▪□▪▪▪▪▪□□▪□▪▪▪▪▪▪▪▪▪▪▪□□□▪▪▪▪ | WA I | Orphan | 1 | 4.3 |
Mafric | L5 | ND | Del | Undel | ▪□▪▪▪▪▪▪□□□□□□▪▪▪▪▪▪▪□□□□▪▪▪▪▪▪▪▪▪▪▪□□□▪▪▪▪ | WA I | 319 | 2 | 8.8 |
Mafric | L5 | ND | Del | Undel | ▪▪▪▪▪▪▪▪□□□□□▪▪▪▪▪▪▪▪□□□□□▪□□□□□□□□□□□□□▪▪▪ | WA I | 1592 | 1 | 4.3 |
Mafric | L6 | ND | Undel | Del | ▪▪▪▪▪▪□□□▪▪▪▪▪□▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□▪▪▪▪ | WA 2 | 324 | 2 | 8.8 |
Mafric | L6 | ND | Undel | Del | ▪▪▪▪▪▪□□□▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□▪▪▪▪ | WA 2 | 181 | 1 | 4.3 |
Mafric | L6 | ND | Undel | Del | ▪□▪▪▪▪□□□▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□▪▪▪▪ | WA 2 | 318 | 1 | 4.3 |
Mafric | L6 | ND | Undel | Del | ▪▪▪▪▪▪▪▪▪□▪▪▪□□▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪▪□▪▪▪▪ | WA 2 | Orphan | 1 | 4.3 |
Sub-lineage as defined by the MIRU-VNTRplus database, Undel = not deleted, Del = deleted, ND = Not done.