Skip to main content
. 2015 Jan 8;11(1):e1004565. doi: 10.1371/journal.ppat.1004565

Table 3. Defined T cell targets in individual R463F.

18mer Peptides (s) Optimal epitope
Protein Amino acid positiona Designation Amino acid sequence Amino acid positiona Designation Amino acid sequence HLAb
Gag 132–149 Gag 132–149 YPVVQNAQGQWVHQNFSP 140–147 Gag 140–147 GQWVHQNF B1503**
140–157 Gag 140–157 GQWVHQNFSPRTLNAWVK 140–147 Gag 140–147 GQWVHQNF
292–309 Gag 292–309 PFRDYVDRFFKTLRAEQA
381–398 Gag 381–398 GNFKGQRKIKCFNCGKE
Pol 409–426 Pol 409–426 VNDIQKLVGKLNWASQIY 417–426 Pol 417–426 GKLNWASQIY A3002*
417–434 Pol 417–434 GKLNWASQIYAGIKVKQL 417–426 Pol 417–426 GKLNWASQIY
897–914 Pol 897–914 IHNFKRKGGIGGYSAGER
929–946 Pol 929–946 QKQITKIHKFRVYYRDSR 933–942 Pol 933–942 TKIHKFRVYY B1503*
969–986 Pol 969–986 NNDIKVVPRRKAKIIRDY 977–986 Pol 977–986 RKAKIIRDY B1503*
977–994 Pol 977–994 RRKAKIIRDYGKQMAGDD 978–986 Pol 978–986
985–1002 Pol 985–1002 DYGKQMAGDDCVAGRQDE
Env 1–15 Env 1–15 MRVMGTQMNYQNLWRWGI
334–351 Env 334–351 SKAEWNETVRRVAEQLEK
342–360 Env 342–360 VRRVAEQLEKYFKNKTIK
402–420 Env 402–420 TVNATRSENDTINLPCRI
Tat 33–50 Tat 33–50 HCLVCFQHKGLGISYGRK 38–47 Tat 38–47 FQHKGLGISY B1503*
Nef 177–194 Nef 177–194 EGETLQWKFDSYLAFKHI 183–191 Nef 183–191 WKFDSYLAF B1503**
a

relative to HXB2.

b

presenting HLA allele previously described (*) or predicted (**).