Table 2.
Phylogenetic affinities of the fungal ITS coding sequences retrieved from swab samples of the Archimedes Palimpsest
| Phylum | Clones (%) and selected clone | Closest identified phylogenetic relatives (EMBL accession numbers) | Similarity (%) | Acc. Nr. |
|---|---|---|---|---|
| Sample AP1 | ||||
| Zygomycota |
82.6 % AP1-F1 |
Mucor spp. [HQ630989, EU326196, AY243949]. | 100 | KF983505 |
|
4.3 % AP1-F6 |
Mucor spp. [HQ630989, EU326196, AY243949]. | 99.0 | KF983506 | |
|
4.3 % AP1-F46 |
Mucor spp. [HQ630989, EU326196, AY243949]. | 99.0 | KF983507 | |
|
2.2 % AP1-F49 |
Mucor spp. [HQ630989, EU326196, AY243949]. | 99.0 | KF983508 | |
| Ascomycota |
2.2 % AP1-F24 |
Penicillium spp. [GU372906, GU372905] isolates from cork samples. | 99.0 | KF983509 |
|
2.2 % AP1-F13 |
Uncultured fungal clone [GU053879]. |
99.0 98.0 |
KF983510 | |
| Basidiomycota |
2.2 % AP1-F10 |
Trichosporon inkin [JX463242, NR_073243]. | 99.0 | KF983511 |
| Sample AP2 | ||||
| Ascomycota |
86.4 % AP2-F2 |
Uncultured fungus clone F1-O15 [JX984691, GU054220, FJ820820] from air. Blumeria graminis strains [AB273546, AB273543, AB273542] a powdery mildew fungus of cereals. |
99.0 99.0 |
KF983512 |
|
4.5 % AP2-F4 |
Uncultured fungus clone F1-O15 [JX984691, GU054220, FJ820820] from air. Blumeria graminis strains [AB273546, AB273543, AB273542] a powdery mildew fungus of cereals. |
99.0 99.0 |
KF983513 | |
|
9.1 % AP2-F45 |
Penicillium oxalicum [KF152942], lignocellulolytic enzymes production by a Penicillium. Penicillium sp. 3 BRO-2013 [KF367495], fungi in water source and their potential pathogenicity. |
99.0 99.0 |
KF983514 | |
| Sample AP3 | ||||
| Ascomycota |
23.7 % AP3-F1 |
Uncultured fungus clone 20–52 [KC884473], the diversity of fungal community in permafrost soil. Cladosporium sp. Strains [KF367544; KF367490], occurrence of fungi in water sources and their potential pathogenicity. Cladosporium cladosporioides strain ML370 [KC692219]. |
100 100 100 |
KF983515 |
|
2.6 % AP3-F3 |
Uncultured fungus clone 20–52 [KC884473] Diversity of fungal community in permafrost soil. Cladosporium sp. Strains [KF367544; KF367490], occurrence of fungi in water sources and their potential pathogenicity. Cladosporium cladosporioides strain ML370 [KC692219]. |
99.0 99.0 99.0 |
KF983516 | |
|
18.4 % AP3-F7 |
Uncultured fungus clone 20–52 [KC884473], the diversity of fungal community in permafrost soil. Cladosporium sp. Strains [KF367544; KF367490], occurrence of fungi in water sources and their potential pathogenicity. Cladosporium cladosporioides strain ML370 [KC692219]. |
100 100 100 |
KF983517 | |
|
13.2 % AP3-F16 |
Uncultured fungus clone 20–52 [KC884473], the diversity of fungal community in permafrost soil. Cladosporium sp. Strains [KF367544; KF367490], occurrence of fungi in water sources and their potential pathogenicity. Cladosporium cladosporioides strain ML370 [KC692219]. |
99.0 99.0 99.0 |
KF983518 | |
|
2.6 % AP3-F20 |
Uncultured fungus clone [JX123348, JX123346], fungal endophytes. |
99.0 99.0 |
KF983519 | |
|
2.6 % AP3-F4 |
Acremonium charticola culture-collection UOA/HCPF < GRC>:14413 [KC253940], common and emerging mold pathogens in Greece. | 98.0 | KF983520 | |
|
5.3 % AP3-F5 |
Hypoxylon spp. [GU166476, JN198512]. | 88.0 | KF983521 | |
|
2.6 % AP3-F32 |
Uncultured Pezizomycotina clones [JF449770, JF449825] from leaf litter. | 98.0 | KF983522 | |
|
2.6 % AP3-F44 |
Stachybotrys sp. [JN093263] from decaying hardwood. Stachybotrys longispora [AF081482] toxigenic fungal species of Stachybotrys. |
98.0 98.0 |
KF983523 | |
|
2.6 % AP3-F6 |
Knufia petricola [AJ507323], lithobiontic dimorphous dematiaceous fungus isolated from marble rock. | 91.0 | KF983524 | |
|
2.6 % AP3-F40 |
Knufia petricola [AJ507323], lithobiontic dimorphous dematiaceous fungus isolated from marble rock. | 99.0 | KF983525 | |
|
18.5 % AP3-F11 |
Uncultured Coniosporium clone MP45 [HM136653] from plant roots. Coniosporium sp. MA4666 [AJ971447], microcolonial fungi from antique marbles in Perge/Side/Termessos (Antalya/Turkey). |
99.0 98.0 |
KF983526 | |
|
2.6 % AP3-F27 |
Uncultured fungal clones [JX984717, JX984762] atmospheric fungal communities. Capnobotryella spp. [AJ972860, AJ972854], microcolonial fungi from antique marbles in Perge/Side/Termessos (Antalya/Turkey). |
98.0 98.0 |
KF983527 | |