Table 1.
SNPs of bovine NR1I3 gene found in Nellore cattle, their genotypic frequency and MAF.
| SNPs | Nomenclature | NCBI ref. n°. | Genotypes |
MAF | N° of DNA sequences | ||
|---|---|---|---|---|---|---|---|
| A1A1 | A1A2 | A2A2 | |||||
| SNP01 | c.-81-176G > A | rs207913429 | 39 | 3 | 0.036 | 42 | |
| SNP02 | c.-78G > A | ss492952008 | 10 | 22 | 10 | 0.500 | 42 |
| SNP03 | c.107G + 141T > C | ss492952011 | 14 | 23 | 12 | 0.480 | 49 |
| SNP04 | c.107G + 192C > A | ss492952014 | 48 | 1 | 0.020 | 49 | |
| SNP05 | c.107G + 243T > C | ss492952017 | 44 | 5 | 0.051 | 49 | |
| SNP06 | c.107G + 321C > T | ss492952020 | 14 | 23 | 12 | 0.480 | 49 |
| SNP07 | c.239 T-400G > A | ss492952023 | 15 | 20 | 11 | 0.457 | 46 |
| SNP08 | c.239 T-344 T > C | rs109470451 | 41 | 5 | 0.054 | 46 | |
| SNP09 | c.239 T-261 T > C | ss492952028 | 22 | 19 | 5 | 0.315 | 46 |
| SNP10 | c. 265 T > C | ss492952030 | 29 | 13 | 4 | 0.228 | 46 |
| SNP11 | c.309G > A | ss492952033 | 29 | 13 | 4 | 0.239 | 46 |
| SNP12 | c.409G-35A > T | ss492952036 | 28 | 14 | 4 | 0.290 | 46 |
| SNP13 | c.448G > A | ss492952039 | 43 | 3 | 0.033 | 46 | |
| SNP14 | c.489 T > C | rs211651336 | 43 | 3 | 0.033 | 46 | |
| SNP15 | c.549G-105G > A | ss492952045 | 44 | 3 | 0.032 | 47 | |
| SNP16 | c.549G-25C > T | ss492952048 | 30 | 7 | 10 | 0.287 | 47 |
| SNP17 | c.695C-29C > A | ss492952051 | 44 | 3 | 0.032 | 47 | |
| SNP18 | c.696G > A | ss492952054 | 44 | 3 | 0.032 | 47 | |
| SNP19 | c.738 T > C | ss492952057 | 29 | 7 | 10 | 0.293 | 46 |
| SNP20 | c.798C > T | rs134389810 | 44 | 3 | 0.032 | 47 | |
| SNP21 | c.917G + 20G > A | rs132968864 | 28 | 14 | 3 | 0.222 | 45 |
| SNP22 | c.917G + 294C > T | ss492952066 | 25 | 17 | 3 | 0.256 | 45 |
| SNP23 | c.*136C + 61G > C | rs384288081 | 41 | 3 | 0.033 | 44 | |
| SNP24 | c.*136C + 123C > T | ss492952072 | 42 | 3 | 0.033 | 45 | |