Table 2.
Allele frequencies of Philippine native breed.
| Breed |
Holstein × Sahiwal |
Brahman |
Native |
|||||
|---|---|---|---|---|---|---|---|---|
| Island |
Cebu |
Luzon |
Luzon |
Leyte |
Bohol |
Iloilo |
Luzon |
Leyte |
| DRB3 | (N = 98a) | (N = 151a) | (N = 184a) | (N = 52a) | (N = 66a) | (N = 120a) | (N = 29a) | (N = 267a) |
| *0101 | 14.29b | 12.25b | – | – | – | 0.42 | – | – |
| *0201 | 4.08 | 6.95b | 6.52b | 2.88 | 7.58b | 8.75b | 8.62b | 8.24b |
| *0301 | – | 0.33 | 0.82 | 0.96 | 18.18b | 5.42b | – | 14.23b |
| *03021 | 0.51 | – | 1.90 | – | 0.76 | 1.25 | – | 0.94 |
| *0501 | 2.04 | 0.66 | – | 1.92 | 0.76 | 0.42 | – | 0.94 |
| *0502 | – | – | – | – | – | – | – | 0.19 |
| *0503 | 1.02 | – | – | – | – | 4.17 | – | – |
| *0601 | 0.51 | 0.33 | – | – | – | – | – | – |
| *0701 | 1.53 | 1.32 | 2.45 | – | 0.76 | 7.92b | 1.72 | – |
| *0801 | – | – | 0.27 | – | – | – | – | 0.37 |
| *0901 | 6.12b | 0.33 | – | – | – | – | 1.72 | 0.37 |
| *0902 | 5.61b | 4.97 | 0.54 | 13.46b | – | 0.42 | 1.72 | 0.75 |
| *1001 | 2.55 | 6.62b | 1.09 | 6.73b | – | – | 1.72 | 0.37 |
| *1101 | 3.06 | 6.62b | 0.27 | – | – | 3.75 | – | – |
| *1103 | 0.51 | – | – | – | 0.76 | 0.83 | – | 3.75 |
| *1104 | – | 4.30 | 0.82 | – | – | – | – | – |
| *1201 | 14.80b | 12.91b | 5.43b | 13.46b | 2.27 | – | 8.62b | 0.75 |
| *1301 | 3.57 | 4.30 | – | – | – | – | – | 0.19 |
| *1302 | – | – | 0.27 | – | – | – | 1.72 | – |
| *14011 | 3.57 | 2.98 | 1.90 | 1.92 | – | – | – | 1.12 |
| *1501 | 5.10b | 6.62b | 2.45 | 0.96 | 10.61b | 8.33b | 1.72 | 3.00 |
| *1502 | – | – | – | – | – | – | – | 0.19 |
| *1601 | 0.51 | 0.33 | 1.09 | – | – | 0.42 | – | 4.31 |
| *1602 | – | 0.33 | 0.54 | – | – | – | – | 0.37 |
| *1701 | – | 0.33 | – | – | – | 0.42 | – | – |
| *1703 | 3.57 | 2.32 | 5.98b | – | 8.33b | – | 3.45 | 0.19 |
| *1801 | 2.04 | 6.62b | 1.90 | 4.81 | – | 0.42 | – | 0.19 |
| *1901 | – | 1.32 | 1.63 | – | – | 0.42 | – | – |
| *1902 | 0.51 | – | – | – | – | – | – | – |
| *20012 | 3.57 | 2.32 | 0.27 | – | – | 0.83 | – | – |
| *2002 | – | – | 0.54 | – | – | 0.42 | – | – |
| *2003 | – | – | 1.09 | 0.96 | – | 1.25 | 1.72 | – |
| *2005 | 0.51 | – | 0.54 | – | – | 1.67 | – | – |
| *2006 | 1.53 | 0.99 | – | – | – | – | – | – |
| *2008c | – | – | 0.82 | – | – | 2.50 | – | – |
| *2101 | – | – | 0.54 | – | – | – | 1.72 | – |
| *2201 | – | 0.66 | 7.34b | 2.88 | – | – | 6.90b | 3.00 |
| *2301 | – | – | 0.27 | 0.96 | – | 0.83 | 1.72 | – |
| *2403 | 0.51 | – | – | – | – | – | – | – |
| *25011 | – | – | 1.90 | – | 4.55 | 5.83b | 1.72 | 3.93 |
| *25012 | 1.53 | – | – | – | – | 0.83 | – | 0.19 |
| *2502 | – | 0.66 | – | – | – | 0.42 | – | – |
| *2601 | – | – | 1.09 | – | – | – | – | – |
| *2701 | – | – | 0.27 | – | – | – | 1.72 | – |
| *2703 | 6.63b | 2.32 | – | – | – | – | – | 0.56 |
| *2704 | – | – | 0.54 | – | – | – | 1.72 | 0.37 |
| *2705 | 2.55 | 3.31 | 1.90 | 0.96 | – | – | 1.72 | – |
| *2707 | 0.51 | – | 0.82 | – | – | – | 1.72 | 0.37 |
| *2710 | – | – | 0.54 | – | 1.52 | 1.25 | 3.45 | 1.12 |
| *2801 | – | – | 5.71b | – | 0.76 | 0.42 | 3.45 | 1.69 |
| *2802 | – | – | 1.36 | – | – | – | 1.72 | 0.19 |
| *3001 | – | 0.99 | 9.51b | 28.85b | 3.79 | 2.50 | 10.34b | 3.93 |
| *3002 | – | – | 0.27 | – | – | – | – | – |
| *3101 | 0.51 | – | 4.08 | 0.96 | – | – | – | 2.43 |
| *3102 | – | – | 0.27 | – | – | – | – | – |
| *3201 | 1.02 | – | – | – | – | 0.42 | – | – |
| *3202 | 0.51 | – | 1.36 | 0.96 | – | – | – | 0.75 |
| *3301 | 2.04 | 1.99 | 2.17 | 1.92 | – | 0.42 | 3.45 | 1.50 |
| *3401 | – | – | – | – | 1.52 | 1.25 | – | – |
| *3403c | 1.02 | – | – | 1.92 | 5.30b | 5.83b | – | 2.06 |
| *3501 | – | – | 2.45 | – | 1.52 | – | 5.17b | 2.62 |
| *3601 | 1.02 | 2.32 | 8.42b | 9.62b | 6.82b | 0.83 | 6.90b | 1.69 |
| *3701 | – | 1.32 | – | – | – | – | – | – |
| *3901 | – | – | 0.82 | – | – | 0.83 | – | 0.19 |
| *4002 | – | – | 0.27 | – | – | 2.92 | 1.72 | 2.62 |
| *4101 | – | – | 0.54 | 1.92 | 2.27 | 4.58 | – | 6.74b |
| *4201 | – | – | 0.82 | – | – | – | 1.72 | 0.56 |
| *4301 | – | – | 1.36 | 0.96 | 8.33b | 2.50 | 1.72 | 2.25 |
| *4302 | – | – | 0.27 | – | 2.27 | 3.75 | 1.72 | 1.12 |
| *4303 | – | – | 0.54 | – | – | 2.08 | 1.72 | – |
| *4401 | – | – | 0.54 | – | – | – | – | 1.31 |
| *4501 | – | 0.33 | – | – | – | – | – | – |
| *4801 | 0.51 | – | – | – | – | 0.83 | – | – |
| *4802 | – | – | 1.36 | – | – | – | 1.72 | 0.75 |
| *5001 | 0.51 | – | – | – | 4.55 | 0.83 | – | 3.18 |
| *50011c | – | – | – | – | 3.03 | 2.92 | – | 4.87 |
| *5702 | – | – | 2.17 | – | 3.03 | 3.33 | 1.72 | 5.81b |
| *6101 | – | – | 0.27 | – | – | – | – | – |
| *6201 | – | – | – | – | – | 0.42 | – | 0.19 |
| *6301 | – | – | – | – | – | 0.42 | – | 0.37 |
| *6401 | – | – | 0.54 | – | – | – | – | – |
| *7201c | – | – | 0.54 | – | 0.76 | 0.83 | 1.72 | 2.81 |
| *7301c | – | – | – | – | – | 2.92 | – | 0.37 |
| Total no. of allele | 36 | 32 | 56 | 21 | 24 | 46 | 33 | 50 |
a
N, number of cattle investigated.
b
Frequent alleles in each population are in bold and underlined (> 5%).
c
Novel alleles identified in this study.