Table 3.
Distribution of SSRs and cSSRs across coding and non-coding regions for representative Alphavirus genomes.
| Regions in genome |
Number of SSRs (region) |
Number of cSSRs (region) |
|||||||
|---|---|---|---|---|---|---|---|---|---|
| S. No | Genome size (bp) | Coding (bp) | Non coding (bp) | Total | Coding | Non-coding | Total | Coding | Non-coding |
| A5 | 11612 | 26-7429, 7495-11241 | 1-25, 7430-7494, 11242-11612 | 39 | 37 | 2 | 0 | 0 | 0 |
| A10 | 11557 | 1-5553, 7440-11150 | 5554-7439, 11151-11557 | 41 | 31 | 10 | 1 | 1 | 0 |
| A15 | 11391 | 43-7410, 7446-11210 | 1-42, 7411-7445, 11211-11391 | 42 | 41 | 1 | 0 | 0 | 0 |
| A20 | 11948 | 80-7561, 7606-11370 | 1-79, 7562–7605, 11371-11948 | 45 | 41 | 4 | 2 | 1 | 1 |
| A25 | 11530 | 44-7549, 7585-11349 | 1-43, 7550–7584, 11350-11530 | 42 | 39 | 3 | 2 | 2 | 0 |
| A30 | 11616 | 61-5625, 7526-11266 | 1-60, 5626-7525, 11267-11616 | 28 | 22 | 6 | 3 | 2 | 1 |