Table 1.
Genetic variants detected in the LIPE gene by re-sequencing a panel of different cattle breeds. Chr Pos (UMD 3.1): chromosome position. AA: Angus, He: Hereford, Ho: Holstein, Sho: Shorthorn, Lim: Limousin, Wa: Wagyu, Ne: Nelore, Br: Brahman.
| Reference number | Chr Pos | Status | Region | Type | Change | Sequence | AA (monomorphic) | BB (monomorphic) | Polymorphic breeds |
|---|---|---|---|---|---|---|---|---|---|
| ss974514528 | 51217451 | Novel | Upstream | Non coding | CTGGGACCCC G/A GGGCCCAGTG | AA, Br, Cr, He, Lim, Ne, Sho, Wa | Ho | ||
| rs210602748 | 51217544 | Reported | Exon 1 | Missense | Arg × His | ATGGACCTGC G/A CACCATGACA | AA, Cr, He, Ho, Lim, Sho, Wa | Br, Ne | |
| rs211620292 | 51217620 | Reported | Exon 1 | Synonymous | CCGGGGAGAC G/A GCCCGGCGGC | He, Ne, Sho, Wa | AA, Br, Cr, Ho, Lim | ||
| rs208278382 | 51217635 | Reported | Exon 1 | Synonymous | GGCGGCTGAC G/A GGCGTCTTTG | AA, Cr, He, Ho, Lim, Sho, Wa | Ne | Br | |
| rs41887418 | 51217809 | Reported | Exon 1 | Synonymous | AATCGCGCTA T/C GTGGCCTCCA | Wa | Ne | AA, Br, Cr, He, Ho, Lim, Sho | |
| rs209811676 | 51217959 | Reported | Exon 1 | Synonymous | GGCTCTTCTT T/C GAGGGTGATG | AA, Cr, He, Ho, Lim, Sho, Wa | Br, Ne | ||
| ss974514534 | 51220859 | Novel | Intron 3 | Non coding | GGGCCCAGGG C/A GGGCACAGGA | AA, Br, Cr, He, Ho, Lim, Sho, Wa | Ne | ||
| ss974514535 | 51220921 | Novel | Intron 3 | Non coding | GGACCCCTGC C/A AGCAGTTCCT | AA, Cr, He, Ho, Lim, Sho, Wa | Br, Ne | ||
| rs207891334 | 51221010 | Reported | Exon 4 | Synonymous | GCCTGCCACC C/T GTCGCCTTTG | AA, Cr, He, Ho, Lim, Sho, Wa | Br, Ne | ||
| rs109759779 | 51221527 | Reported | Exon 5 | Synonymous | CCCTGGCCCC C/A GAGGCCCCCT | Br, Ne, Wa | AA, Cr, He, Ho, Lim, Sho | ||
| rs133711876 | 51222749 | Reported | Intron 6 | Non coding | TTGAGACTGG G/A CCCAGAAAGA | Br, Ne, Wa | AA, Cr, He, Ho, Sho | ||
| rs41887412 | 51222768 | Reported | Intron 6 | Non coding | GAGAGGAGAC T/C AACTCACCCA | Br, Ne, Wa | AA, Cr, He, Ho, Sho | ||
| rs109598915 | 51222827 | Reported | Exon 7 | Missense | Asp × Ala | GACCACCCCG A/C CTCAGACCAG | Br, Ne, Wa | AA, Cr, He, Ho, Lime, Sho | |
| ss974514541 | 51222849 | Novel | Exon 7 | Synonymous | AGGCGCTGGG T/C GTGATGGGGC | AA, Cr, He, Ho, Lim, Sho, Wa | Br, Ne | ||
| rs41887411 | 51222864 | Reported | Exon 7 | Synonymous | TGGGGCTCGT A/G CAGCGGGACA | AA, Lim | Br, Ne | Cr, He, Ho, Sho, Wa | |
| ss974514543 | 51222900 | Novel | Exon 7 | Synonymous | GAGACCTCCG G/C CTGGGCGCCT | AA, Cr, He, Ho, Lim, Sho, Wa | Br, Ne | ||
| rs41887408 | 51226081 | Reported | Exon 8 | Missense | Arg × Gln | GCCCTGACCC G/A GCCGGAGGGC | AA, Br, Cr, He, Ho, Lim, Ne, Sho, Wa | ||
| rs41887407 | 51226092 | Reported | Exon 8 | Missense | Pro × Ser | GCCGGAGGGC C/T CACTGGGAAC | Ne, Wa | AA, Br, Cr, He, Ho, Lim, Sho | |
| rs211581461 | 51226221 | Reported | Exon 8 | Missense | Ile × Val | ACCCTCAACC A/G TCAACTTCTT | He, Ho, Ne, Sho, Wa | AA, Br, Cr, Lim | |
| rs41887406 | 51226263 | Reported | Exon 8 | Missense | Glu × Lys | TGAAATGTCT G/A AGGCCCCAGA | Br, Ne, Wa | AA, Cr, He, Ho, Lim, Sho | |
| rs41887404 | 51226856 | Reported | Intron 8 | Non coding | CCCCGCCCCC [G/A] CAGGCCTGCG | Cr, Sho * |