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. 2014 Apr 17;2:283–298. doi: 10.1016/j.mgene.2014.03.002

Table 2.

SNPs diversity in Latvian, Lithuanian and Taiwanese populations.

Marker ID Population MAF Genotype frequency
HWP (χ2) Nucleotide diversity (π) Test of neutrality
11 12 22 Tajima's DT Fu and Li's D* Fu and Li's F*
rs2277460 LV 0.0654 0.8691 0.1309 0.94 0.12265 − 0.18389 0.42624 0.27631
LT 0.0933 0.8133 0.1867 1.59 0.16981 0.06301 0.43609 0.37690
TW 0.0073 0.9854 0.0146 0.06 0.01449 − 0.66360 0.37096 0.03623
rs1048990 LV 0.0890 0.8272 0.1676 0.0052 0.21 0.16259 0.05540 0.42624 0.36631
LT 0.1533 0.7067 0.2800 0.0133 0.92 0.26051 0.60431 0.43609 0.57821
TW 0.3254 0.4211 0.5068 0.0702 26.15*** 0.43925 1.98494 0.37096 1.09877
rs2295826 LV 0.1047 0.8115 0.1673 0.0209 2.16 0.18799 0.20752 0.42624 0.42353
LT 0.1700 0.7000 0.2600 0.0400 0.93 0.28314 0.73936 0.43609 0.62844
TW 0.1545 0.7092 0.2726 0.0182 2.05 0.26140 0.87595 0.37096 0.65397
rs2295827 LV 0.1047 0.8115 0.1673 0.0209 2.16 0.18799 0.20752 0.42624 0.42353
LT 0.1700 0.7000 0.2600 0.0400 0.93 0.28314 0.73936 0.43609 0.62844
TW 0.1468 0.7065 0.2935 34.45*** 0.25056 0.80841 0.37096 0.62677
rs2348071 LV 0.2932 0.5340 0.3456 0.1204 5.28* 0,41555 1.57068 0.42624 0.93621
LT 0.2667 0.5400 0.3867 0.0733 0.02 0.39242 1.39150 0.43609 0.87098
TW 0.6541 0.1859 0.3199 0.4941 94.14*** 0.45274 2.06904nd 0.37096 1.13251

LV, LT and TW abbreviations are used to indicate Latvian, Lithuanian and Taiwanese populations respectively; MAF is given according to allele being minor in European populations. Statistical significance levels of probability correspond to: nd not determined (P = 0.05); * P < 0.05;  *** P < 0.001.