Figure 3. Schematic of reads from T. b. brucei TREU 927/4 and T. evansi STIB805 mapped on to the procyclin loci of T. brucei.

CDS are denoted by yellow arrows, with Tb927 GeneIDs above and gene names in parentheses. Reads that could be uniquely mapped to the reference are colored blue (intact paired reads), green (single forward reads) or red (single reverse reads). Reads that could be mapped to more than one position in the Tb927 reference were placed randomly and are colored yellow. Red asterisks denote mutated or absent CDS in T. evansi. Both PAG5 and PAG2* are missing in T. evansi, and mutations are present in all copies of EP2, PAG3, and GRESAG2.