Table 3.

Differentially expressed proteases, protease-inhibitors, and laccase-1 genes in A. glycines fed with Rag1- soybean

Gene	Transcript ID 1	Description	Log2 fold change 2
Up-regulated
Proteases
AySP1	contig_3884	Serine protease	1.17
AySP2	contig_6872	Serine protease snake-like	1.08
AySP3	contig_25003	Serine proteinase stubble-like	1.49
AySP4	contig_11484	Serine proteinase stubble-like isoform 2	1.78
AySP5	contig_4951	Venom protease-like	0.88
AySP6	contig_237	Venom protease-like	1.21
Protease-inhibitors
AySPI1	contig_3885	Serpin b4-like	1.25
AySPI2	contig_37590	Serpin b8 isoform 2	3.32
Laccases
Aylac1	contig_45158	Laccase-1-like isoform 1	2.87
Aylac2	contig_26518	Laccase-1-like isoform 1	2.74
Aylac3	contig_7195	Multicopper oxidase	2.41
Aylac4	contig_22703	Multicopper oxidase	2.59
Down-regulated
Proteases
AySP7	contig_1678	Serine protease	-1.98
AySP8	contig_4515	Serine protease	-4.06
AySP9	contig_23830	Serine protease	-3.37
AySP10	contig_5272	Serine proteinase stubble	-3.02
AySP11	contig_11924	Transmembrane protease serine 9-like isoform 1	-1.45
AySP12	contig_3508	Transmembrane protease serine 9-like isoform 2	-1.67
AySP13	contig_14346	Hypothetical protein LOC100166829	-2.73
AyCP1	contig_5565	Carboxypeptidase b-like	-2.07
AyCP2	contig_5566	Carboxypeptidase b-like	-2.62
AyCP3	contig_8089	Carboxypeptidase m	-0.93
AyCP4	contig_10493	Carboxypeptidase m-like	-1.06
Protease-inhibitors
AySPI3	contig_6531	Serine protease serpin	-2.46
AySPI4	contig_5436	Serpin b10	-1.23

¹Nucleotide sequence for each contig is provided in Additional file 9.

²Fold change values for gene expression were considered significant if P <0.05.