TABLE V.
Expression quantitative trait loci in IL1RL1 associated with sST2 BAL levels
| Allele frequency | P value (odds ratio) | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| rsID | Location | MAF | n | Genotype | HI (n) | LO (n) | Overall | Overall Dominant model | Recessive model |
| 10178436 | 5′ of IL1RL1 | 0.441 | 46 | CC = 21.7% | 1 | 10 | <.0001 | .0009 (n/a) | <.0001 (n/a) |
| TC = 56.5% | 15 | 11 | |||||||
| TT = 21.7% | 10 | 0 | |||||||
| 11685424 | 5′ of IL1RL1 | 0.458 | 46 | AA = 21.7% | 0 | 10 | <.0001 | <.0001 (n/a) | .0009 (n/a) |
| GA = 56.5% | 15 | 11 | |||||||
| GG = 21.7% | 10 | 0 | |||||||
| 12712135 | Intron of ST2L mRNA | 0.44 | 36 | AA = 22.2% | 8 | 0 | .0001 | .001 (n/a) | .005 (n/a) |
| GA = 58.3% | 12 | 9 | |||||||
| GG = 19.4% | 0 | 7 | |||||||
| 1420089 | Intron of ST2L mRNA | 0.102 | 46 | AA = 78.2% | 16 | 20 | .02 | .35 | .01 (11.3) |
| GA = 19.6% | 8 | 1 | |||||||
| GG = 2.2% | 1 | 0 | |||||||
| 1041973 | Missense A to E ST2L and sST2 position 78 | 0.288 | 41 | AA = 7.3% | 0 | 3 | .02 | .02 (.18) | .06 |
| AC = 29.3% | 5 | 3 | |||||||
| CC = 63.4% | 19 | 7 | |||||||
| 1420101 | Intron in both ST2L and sST2 mRNA | 0.371 | 46 | AA = 10.9% | 0 | 5 | .02 | .14 | .01 (n/a) |
| GA = 47.8% | 12 | 10 | |||||||
| GG = 41.3% | 13 | 6 | |||||||
| 17696376 | Intron in ST2L mRNA | 0.074 | 36 | CC = 80.6% | 13 | 16 | .01 | 1.0 | .01 (n/a) |
| CT = 16.7% | 6 | 0 | |||||||
| TT = 2.8% | 1 | 0 | |||||||
| 1921622 | Intron in ST2L mRNA | 0.411 | 46 | AA = 10.9% | 0 | 5 | .03 | .01 (n/a) | .36 |
| AG = 52.1% | 14 | 10 | |||||||
| GG = 37.0 | 11 | 6 | |||||||
| 10185897 | Intron in ST2L mRNA | 0.142 | 36 | AA = 2.8% | 0 | 1 | .04 | .44 | .03 (.18) |
| AC = 27.8% | 3 | 7 | |||||||
| CC = 69.4% | 17 | 8 | |||||||
| 13015714 | 3′ of IL1RL1 | 0.27 | 46 | GG = 6.5% | 3 | 0 | .01 | .24 | .02 (5.1) |
| GT = 52.2% | 16 | 8 | |||||||
| TT = 41.3% | 6 | 13 | |||||||
N/a indicates that an odds ratio could not be calculated due to a 0 value.
MAF, Minor allele frequency