Table 3.
miRNA expression in RMS tumours
| A | B | |||||||
|---|---|---|---|---|---|---|---|---|
| miRNA_ID | log 2 FC | log 2 CPM | miRNA_ID | log 2 FC | log 2 CPM | miRNA_ID | log 2 FC | log 2 CPM |
| hsa-miR-885-5p | −6.93 | 7.34 | hsa-miR-4256 | −2.95 | 9.13 | hsa-miR-4327 | 9.95 | 3.61 |
| hsa-miR-144-5p | −5.62 | 8.27 | hsa-miR-218-5p | −2.95 | 11.07 | hsa-miR-508-3p | 9.63 | 3.40 |
| hsa-miR-451a | −5.52 | 15.36 | hsa-miR-126-3p | −2.93 | 13.30 | hsa-miR-383 | 7.99 | 6.17 |
| hsa-miR-1 | −5.47 | 16.81 | hsa-miR-5787 | −2.93 | 3.93 | hsa-miR-503-5p | 5.68 | 9.48 |
| hsa-miR-378a-5p | −5.34 | 11.64 | hsa-miR-22-5p | −2.88 | 9.77 | hsa-miR-154-3p | 5.19 | 10.09 |
| hsa-miR-223-3p | −5.12 | 12.89 | hsa-miR-30e-3p | −2.81 | 9.06 | hsa-miR-493-5p | 4.89 | 11.33 |
| hsa-miR-124-3p | −5.06 | 5.79 | hsa-miR-139-5p | −2.79 | 9.02 | hsa-miR-450a-5p | 4.88 | 9.11 |
| hsa-miR-378a-3p | −4.92 | 13.79 | hsa-miR-30b-3p | −2.77 | 3.39 | hsa-miR-500b | 4.68 | 9.25 |
| hsa-miR-378f | −4.80 | 7.02 | hsa-miR-203a | −2.72 | 5.26 | hsa-miR-335-3p | 4.60 | 9.51 |
| hsa-miR-378 h | −4.53 | 4.42 | hsa-miR-185-5p | −2.71 | 8.80 | hsa-miR-376c-5p | 4.59 | 4.14 |
| hsa-miR-378c | −4.47 | 12.37 | hsa-miR-652-3p | −2.68 | 7.09 | hsa-miR-483-3p | 4.55 | 13.10 |
| hsa-miR-599 | −4.39 | 4.93 | hsa-miR-4484 | −2.64 | 3.45 | hsa-miR-376a-2-5p | 4.55 | 5.55 |
| hsa-miR-144-3p | −4.36 | 7.41 | hsa-miR-208b | −2.63 | 5.74 | hsa-miR-503-3p | 4.55 | 4.22 |
| hsa-miR-378i | −4.29 | 6.47 | hsa-miR-24-1-5p | −2.60 | 5.69 | hsa-miR-3182 | 4.43 | 7.92 |
| hsa-miR-378d | −4.29 | 8.81 | hsa-miR-30a-3p | −2.60 | 8.81 | hsa-miR-542-3p | 4.36 | 10.77 |
| hsa-miR-486-5p | −4.14 | 11.78 | hsa-miR-29a-3p | −2.59 | 13.25 | hsa-miR-149-5p | 4.33 | 11.39 |
| hsa-miR-133a | −4.05 | 14.25 | hsa-miR-16-2-3p | −2.55 | 8.81 | hsa-miR-501-5p | 3.81 | 11.03 |
| hsa-miR-95 | −3.96 | 9.35 | hsa-miR-628-3p | −2.54 | 2.47 | hsa-miR-483-5p | 3.48 | 9.68 |
| hsa-miR-378b | −3.86 | 5.55 | hsa-miR-29b-2-5p | −2.54 | 5.75 | |||
| hsa-miR-29c-5p | −3.82 | 7.35 | hsa-miR-133b | −2.53 | 11.85 | C | ||
| hsa-miR-378e | −3.82 | 9.31 | hsa-miR-4300 | −2.51 | 4.76 | miRNA_ID | log 2 FC | log 2 CPM |
| hsa-miR-142-5p | −3.68 | 8.68 | hsa-miR-491-5p | −2.32 | 2.56 | hsa-miR-335-5p | −3.25 | 12.19 |
| hsa-miR-4461 | −3.66 | 2.84 | hsa-miR-873-3p | −2.31 | 3.06 | hsa-miR-489 | −3.30 | 7.64 |
| hsa-miR-378 g | −3.64 | 4.58 | hsa-miR-3687 | −2.31 | 2.75 | hsa-miR-375 | −4.11 | 8.33 |
| hsa-miR-944 | −3.56 | 2.73 | hsa-miR-5095 | −2.27 | 4.86 | hsa-miR-135a-5p | −5.38 | 10.49 |
| hsa-miR-486-3p | −3.54 | 6.75 | hsa-miR-29b-1-5p | −2.26 | 3.58 | hsa-miR-9-3p | −6.07 | 6.89 |
| hsa-miR-29c-3p | −3.54 | 12.27 | hsa-miR-664a-5p | −2.25 | 3.52 | hsa-miR-9-5p | −7.53 | 8.95 |
| hsa-miR-4306 | −3.53 | 3.61 | hsa-miR-664a-3p | −2.24 | 7.74 | hsa-miR-499a-3p | 6.21 | 7.83 |
| hsa-miR-4516 | −3.51 | 3.57 | hsa-miR-4315 | −2.22 | 4.39 | hsa-miR-499a-5p | 6.07 | 9.97 |
| hsa-miR-193b-5p | −3.51 | 6.08 | hsa-miR-3714 | −2.21 | 2.64 | hsa-miR-432-5p | 3.58 | 9.47 |
| hsa-miR-139-3p | −3.49 | 2.94 | hsa-miR-4787-3p | −2.18 | 2.50 | hsa-miR-296-5p | 3.37 | 8.53 |
| hsa-miR-616-5p | −3.41 | 4.29 | hsa-miR-7-5p | −2.14 | 6.83 | hsa-miR-95 | 3.30 | 7.89 |
| hsa-miR-22-3p | −3.39 | 9.05 | hsa-miR-7-1-3p | −2.13 | 7.81 | hsa-miR-31-5p | 3.22 | 8.09 |
| hsa-miR-150-5p | −3.33 | 10.54 | hsa-miR-7-2-3p | −2.06 | 3.97 | |||
| hsa-miR-548v | −3.27 | 3.04 | hsa-miR-23c | −1.98 | 9.82 | |||
| hsa-miR-3117-3p | −3.05 | 1.97 | hsa-miR-584-5p | −1.96 | 2.87 | |||
| hsa-miR-628-5p | −3.03 | 5.41 | hsa-miR-137 | −1.95 | 5.54 | |||
| hsa-miR-1281 | −3.02 | 3.73 | hsa-miR-3607-5p | −1.64 | 10.85 | |||
| hsa-miR-548z | −3.01 | 3.45 | hsa-miR-935 | −1.59 | 5.49 | |||
| hsa-miR-126-5p | −3.00 | 12.54 |
(A) miRNA species expressed at lower levels in RMSs vs. NSM (ARMS and ERMS are collectively considered); (B) miRNA species expressed at higher levels in RMSs vs. NSM (ARMS and ERMS are collectively considered); (C) differentially expressed miRNAs in ERMS vs. ARMS tumours.