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. 2014 Nov 1;15(1):948. doi: 10.1186/1471-2164-15-948

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© Baes et al.; licensee BioMed Central Ltd. 2014

This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Distributions of single nucleotide variant counts (a), insertion and deletion counts (b), and multi-allelic site counts (c) identified per animal. For Platypus results, multi-nucleotide variants were split into allelic primitives for fair comparison between software. Single nucleotide variant counts (a), insertion and deletion counts (b), and multi-allelic site counts (c) identified per animal (n = 65; BTA1-29, BTAX) using single sample variant detection with Platypus, Samtools, and the UnifiedGenotyper following three pre-calling approaches.