Table 2.
Systenic depth# | Genome-wide average | Among NB-LRR loci | Ohnolog enrichement | |
---|---|---|---|---|
B. rapa | 12× | 53% | 42% | No |
E. parvulum | 4× | 32% | 29% | No |
A. thaliana Col-0 | 4× | 22% | 17% | No |
A. lyrata | 4× | 33% | 23% | No |
T. hasslerania | 6× | 44% | 27% | No |
S. tuberosum | 2-3× | 10% | 5% | No |
S. lycopersicum | 2-3× | 19% | 16% | No |
Σ | 30.3% | 22.7% | No |
*Genomes with low assembly quality are excluded from this analysis due to technical reason (see Methods).
#Post-y ploidy level.
Species-wise comparison of retained ohnolog duplicates gene pairs among NB-LRR loci, shown for seven species*. Genomes with below-threshold mean and median scaffold size (N50 ~ 50 kb) are excluded from this analysis due to technical reasons.