Table 2.
List of assemblers evaluated in the study.
Assembler | Website | Version |
---|---|---|
ABySS | http://www.bcgsc.ca/platform/bioinfo/software/abyss | 1.3.7 |
IDBA-UD | http://i.cs.hku.hk/~alse/hkubrg/projects/idba_ud/ | 1.0.9 |
Minia | http://minia.genouest.org/ | 1.5901 |
SOAPdenovo(SOAP) | http://soap.genomics.org.cn/soapdenovo.html | 2-r240 |
SPAdes | http://bioinf.spbau.ru/spades | 3.0.0 |
SparseAssembler(Sparse) | http://sourceforge.net/projects/sparseassembler/ | -- |
Velvet | https://www.ebi.ac.uk/~zerbino/velvet/ | 1.2.10 |