Table 3.
Running time measurement in hours of the seven assemblers against the five fungal pathogens.
| Dataset | ABySS | IDBA-UD | Minia | SOAP | SPAdes | Sparse | Velvet |
|---|---|---|---|---|---|---|---|
| BcDw1 | 2.43(5) | 7.65(6) | 1.02(2) | 0.89(1) | 17.41(7) | 1.24(4) | 1.02(2) |
| UCRNP2 | 3.45(5) | 9.64(6) | 2.18(3) | 1.55(2) | 32.49(7) | 2.21(4) | 1.5(1) |
| UCRPA7 | 2.21(5) | 5.96(6) | 1.11(1) | 1.96(4) | 13.51(7) | 1.45(3) | 1.28(2) |
| UCREL1 | 3.41(5) | 8.25(6) | 1.3(1) | 2.12(4) | 21.63(7) | 1.87(3) | 1.71(2) |
| PST21 | 3.89(5) | 7.88(6) | 1.25(1) | 2.73(4) | ------- | 1.51(3) | 1.46(2) |
Parentheses contain the rank the assembler on the specific dataset. "---" Indicates a corrupted assembly process.