Table 1.
Peptides found in the B. Japonicum analysis
| Sequence | number of identifications (normalized) | elongation / standalone | ORF start | ORF end | reported in [8] |
|---|---|---|---|---|---|
| VLVEGIER | 5 (2.62) | standalone | 498334 | 498939 | |
| FSDYAFPPAVGYPSFAR | 23 (14.78) | standalone | 539034 | 539441 | yes |
| GRPVYGPSGPNTVYQQGR | 15 (10.79) | standalone | 539034 | 539441 | yes |
| KADLEAR | 24 (12.65) | standalone | 1313439 | 1314140 | |
| ALVAEISR | 6 (3.02) | standalone | 1863514 | 1863603 | |
| APPIEPR | 7 (5.19) | elongation | 1926621 | 1927364 | |
| ASVQYFVTR | 7 (5.40) | standalone | 2056995 | 2057228 | yes |
| VAVDAAHK | 6 (3.41) | standalone | 2056995 | 2057228 | yes |
| VAVDAAHKEGK | 5 (3.01) | standalone | 2056995 | 2057228 | yes |
| IGELAEATGVTVR | 9 (6.21) | elongation | 2179134 | 2179862 | |
| ALNLGIGLGHQR | 10 (7.00) | standalone | 2241275 | 2241463 | yes |
| VIESDAGDGER | 6 (4.99) | standalone | 2320354 | 2320803 | yes |
| ASADPAPSPAEAER | 5 (3.40) | standalone | 2320354 | 2320803 | yes |
| LAASQCPVAAIR | 5 (3.01) | standalone | 2320354 | 2320803 | yes |
| TTMEQATAAAK | 14 (7.63) | standalone | 2672562 | 2672918 | yes |
| LQMSADNVADSYAR | 6 (3.80) | standalone | 2672562 | 2672918 | yes |
| ADADLDVVIR | 5 (3.40) | standalone | 2672562 | 2672918 | yes |
| MVDCRIK | 5 (2.41) | standalone | 3263474 | 3263848 | |
| AAEGTLR | 6 (4.01) | standalone | 3686105 | 3687250 | |
| VIAGEQGAQR | 5 (3.40) | standalone | 4603312 | 4603641 | yes |
| ILVLYGSYR | 5 (3.60) | standalone | 4634660 | 4635250 | yes |
| VLDASTAYR | 5 (3.99) | standalone | 4817856 | 4819223 | yes |
| CYQSAAAYVGQDR | 7 (4.21) | standalone | 5865762 | 5866031 | yes |
| LVQIQCER | 5 (2.62) | standalone | 6019469 | 6026782 | |
| GNALLNFGK | 5 (3.40) | standalone | 6030625 | 6031395 | |
| AGSTPIPSAEAPDR | 5 (3.40) | standalone | 6676399 | 6676560 | yes |
| GQGEGAPGQASDR | 9 (4.42) | elongation | 7177670 | 7178182 | |
| VVSKPLPTFTAASDLQIK | 16 (11.60) | standalone | 7341856 | 7342332 | yes |
| YKPFQWGASTYK | 5 (2.80) | standalone | 7341856 | 7342332 | yes |
| LILAEPAPGVR | 5 (3.60) | standalone | 8111257 | 8112012 | yes |
| AVGVLAAEYLR | 6 (4.40) | elongation | 8250513 | 8251328 | |
| GCITPQTGRGQAASPVR | 16 (9.03) | standalone | 8914192 | 8914341 | |
This table shows the peptides of pseudo proteins found in a proteogenomic analysis of B. Japonicum. MS/MS spectra were identified with MS-GF+ and X!Tandem, the combined search results were filtered on a Combined FDR Score level of 0.01. Only peptides, which had at least 5 distinct peptide spectrum matches are reported, peptides from the same ORF respectively pseudo protein are visually grouped by the alternating bold and recursive ORF positions.