TABLE 3.
Homologs of PPpW-4 genes
| ORF/Strand | Length |
Homolog on GenBanka |
|||
|---|---|---|---|---|---|
| bp | aa | Species (accession no.) | Putative function | E value (% identity) | |
| 2/+ | 246 | 81 | Escherichia phage rv5 (YP_002003688.1) | 2e−05 (38) | |
| 3/+ | 330 | 109 | ϕIBB-PF7A (YP_004306315.1), ϕ15 (YP_004286183.1) | 1e−13 (49), 4e−10 (41) | |
| 4/+ | 321 | 106 | ϕIBB-PF7A (YP_004306316.1) | 4e−40 (67) | |
| 6/+ | 543 | 180 | ϕIBB-PF7A (YP_004306317.1), ϕ15 (YP_004286185.1) | 8e−38 (48), 4e−36 (43) | |
| 7/+ | 711 | 236 | ϕIBB-PF7A (YP_004306318.1), ϕ15 (YP_004286186.1) | 2e−81 (55), 2e−5 (34) | |
| 8/+ | 276 | 91 | ϕIBB-PF7A (YP_004306319.1) | 9e−05 (41) | |
| 9/+ | 306 | 101 | ϕIBB-PF7A (YP_004306320.1) | 2e−06 (30) | |
| 10/+ | 2,673 | 890 | ϕIBB-PF7A (YP_004306321.1), ϕ15 (YP_004286187.1) | RNA polymerase | 0 (75), 0 (74) |
| 11/+ | 240 | 79 | ϕIBB-PF7A (YP_004306323.1) | 2e−24 (62) | |
| 12/+ | 264 | 87 | ϕ15 (YP_004286189.1) | 1e−34 (63) | |
| 13/+ | 1,086 | 361 | ϕIBB-PF7A (YP_004306325.1), ϕ15 (YP_004286190.1) | DNA ligase | 5e−153 (63), 8e−170 (68) |
| 14/+ | 435 | 144 | ϕIBB-PF7A (YP_004306326.1), ϕ15 (YP_004286191.1) | 3e−6 (28), 7e−09 (31) | |
| 16/+ | 717 | 238 | ϕIBB-PF7A (YP_004306327.1), ϕ15 (YP_004286193.1) | 4e−88 (58), 1e−75 (52) | |
| 17/+ | 171 | 56 | ϕIBB-PF7A (YP_004306328.1), ϕ15 (YP_004286194.1) | Bacterial RNA polymerase inhibitor | 2e−10 (58), 2e−16 (71) |
| 19/+ | 291 | 96 | ϕ15 (YP_004286195.1) | 3e−08 (59) | |
| 20/+ | 354 | 117 | ϕIBB-PF7A (YP_004306329.1), ϕ15 (YP_004286196.1) | 1e−23 (49), 1e−27 (48) | |
| 21/+ | 672 | 223 | ϕIBB-PF7A (YP_004306330.1), ϕ15 (YP_004286197.1) | Single-stranded DNA-binding protein | 1e−87 (62), 2e−117 (79) |
| 22/+ | 441 | 146 | ϕIBB-PF7A (YP_004306331.1), ϕ15 (YP_004286198.1) | Endonuclease I | 2e−69 (71), 3e−89 (83) |
| 23/+ | 468 | 155 | ϕIBB-PF7A (YP_004306332.1), ϕ15 (YP_004286199.1) | N-acetylmuramoyl–l-alanine amidase | 3e−89 (81), 9e−74 (70) |
| 24/+ | 582 | 193 | ϕIBB-PF7A (YP_004306333.1), ϕ15 (YP_004286201.1) | Nucleotidyl transferase | 5e−86 (70), 3e−67 (58) |
| 25/+ | 1,728 | 575 | ϕIBB-PF7A (YP_004306334.1), ϕ15 (YP_004286202.1) | DNA primase/helicase | 0 (68), 0 (73) |
| 26/+ | 192 | 63 | ϕIBB-PF7A (YP_004306335.1), ϕ15 (YP_004286203.1) | 1e−13 (53), 8e−14 (62) | |
| 27/+ | 2,130 | 709 | ϕIBB-PF7A (YP_004306337.1), ϕ15 (YP_004286204.1) | DNA polymerase | 0 (75), 0 (79) |
| 29/+ | 210 | 69 | ϕ15 (YP_004286206.1) | 3e−36 (84) | |
| 30/+ | 933 | 310 | ϕIBB-PF7A (YP_004306340.1), ϕ15 (YP_004286208.1) | Exonuclease | 1e−148 (67), 0 (82) |
| 31/+ | 249 | 82 | ϕIBB-PF7A (YP_004306341.1), ϕ15 (YP_004286209.1) | 5e−30 (64), 2e−29 (59) | |
| 32/+ | 267 | 88 | ϕIBB-PF7A (YP_004306342.1), ϕ15 (YP_004286210.1) | 5e−10 (46), 2e−21 (52) | |
| 33/+ | 423 | 140 | Pseudomonas phage gh-1 (NP_813770.1) | 9e−39 (52) | |
| 34/+ | 261 | 86 | ϕIBB-PF7A (YP_004306343.1), ϕ15 (YP_004286211.1) | Tail assembly protein | 4e−05 (55), 7e−09 (52) |
| 35/+ | 1,605 | 534 | ϕIBB-PF7A (YP_004306344.1), ϕ15 (YP_004286212.1) | Head-tail connector protein | 0 (81), 0 (81) |
| 36/+ | 972 | 323 | ϕIBB-PF7A (YP_004306345.1), ϕ15 (YP_004286213.1) | Capsid assembly protein | 2e−98 (53), 3e−111 (59) |
| 37/+ | 1,026 | 341 | ϕIBB-PF7A (YP_004306347.1), ϕ15 (YP_004286214.1) | Major capsid protein | 0 (87), 0 (88) |
| 38/+ | 249 | 82 | Pantoea sp. strain At-9b (YP_004115985.1) | Ig domain-containing protein | 1e−20 (63) |
| 39/+ | 588 | 195 | ϕIBB-PF7A (YP_004306348.1), ϕ15 (YP_004286216.1) | Tail tubular protein A | 3e−112 (81), 4e−88 (63) |
| 40/+ | 2,385 | 794 | ϕIBB-PF7A (YP_004306349.1), ϕ15 (YP_004286217.1) | Tail tubular protein B | 0 (66), 0 (63) |
| 41/+ | 438 | 145 | ϕIBB-PF7A (YP_004306350.1), ϕ15 (YP_004286218.1) | Internal virion protein A | 4e−51 (55), 2e−33 (47) |
| 42/+ | 540 | 179 | ϕIBB-PF7A (YP_004306351.1), ϕ15 (YP_004286219.1) | Internal virion protein B | 8e−73 (69), 2e−70 (61) |
| 43/+ | 2,211 | 736 | ϕIBB-PF7A (YP_004306352.1), ϕ15 (YP_004286220.1) | Internal virion protein C | 0 (65), 0 (61) |
| 44/+ | 3,999 | 1,332 | ϕIBB-PF7A (YP_004306353.1), ϕ15 (YP_004286221.1) | Internal virion protein D | 0 (73), 0 (73) |
| 45/+ | 2,445 | 814 | ϕIBB-PF7A (YP_004306354.1) | Tail fiber protein | 2e−67 (75) |
| 46/+ | 216 | 69 | ϕIBB-PF7A (YP_004306355.1), ϕ15 (YP_004286223.1) | Type II holin | 5e−10 (40), 4e−09 (40) |
| 47/+ | 258 | 85 | ϕIBB-PF7A (YP_004306356.1), ϕ15 (YP_004286224.1) | Terminase small subunit | 1e−25 (63), 5e−38 (75) |
| 48/+ | 438 | 145 | ϕIBB-PF7A (YP_004306357.1), ϕ15 (YP_004286225.1) | Endopeptidase | 1e−36 (50), 5e−36 (46) |
| 49/+ | 1,764 | 587 | ϕIBB-PF7A (YP_004306358.1), ϕ15 (YP_004286227.1) | Terminase large subunit | 0 (86), 0 (83) |
| 50/+ | 213 | 70 | ϕIBB-PF7A (YP_004306360.1), ϕ15 (YP_004286228.1) | 2e−15 (61), 7e−15 (60) | |