Table 3.
Significantly up and down regulated genes in the control vs. depressed groups (− = reduction in expression levels).
| Gene symbol | Gene name | Probe ID | Log2 fold change |
|---|---|---|---|
| VTRNA1-2 | vault RNA 1-2 | 8108629 | 2.280673826 |
| PGF | placental growth factor | 7980233 | 0.695475147 |
| RNH1 /// FLJ23519 | ribonuclease/angiogenin inhibitor 1 /// hypothetical protein FLJ23519 | 7945420 | 0.565671098 |
| ITPK1 | inositol 1,3,4-triphosphate 5/6 kinase | 7980970 | 0.549075065 |
| mir503 | − | 8175261 | 0.519417648 |
| RAD23A | RAD23 homolog A (S. cerevisiae) | 8026122 | 0.51907744 |
| FAM183B | acyloxyacyl hydrolase (neutrophil) | 8139160 | 0.50922813 |
| APOC1 | apolipoprotein C-I | 8029536 | 0.502399918 |
| KIR3DL2 /// KIR2DS2 /// KIR2DL2 /// KIR2DL1 /// KIR2DS4 /// KIR2DL3 /// LOC727787 /// KIR2DS5 | killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2 /// killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 2 /// killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 2 /// killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 1 /// killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 4 /// killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 3 /// similar to killer cell immunoglobulin-like receptor 3DL2 precursor (MHC class I NK cell receptor) (Natural killer-associated transcript 4) (NKAT-4) (p70 natural killer cell receptor clone CL-5) (CD158k antigen) /// killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 5 | 8031293 | −0.506084964 |
| SNX4 | sorting nexin 4 | 8090256 | −0.506251931 |
| NEK1 | NIMA (never in mitosis gene a)-related kinase 1 | 8103646 | −0.50748106 |
| RALGPS2 | Ral GEF with PH domain and SH3 binding motif 2 | 7907657 | −0.508099708 |
| RNF160 | ring finger protein 160 | 8069711 | −0.50811689 |
| − | − | 8104012 | −0.508994997 |
| RIF1 | RAP1 interacting factor homolog (yeast) | 8045697 | −0.511151224 |
| LRP2 | low density lipoprotein-related protein 2 | 8056611 | −0.513852689 |
| PTBP2 | polypyrimidine tract binding protein 2 | 7903188 | −0.517797539 |
| ZMAT1 | zinc finger, matrin type 1 | 8174119 | −0.519592242 |
| RUFY2 | RUN and FYVE domain containing 2 | 7933999 | −0.524450233 |
| SNAPC1 | small nuclear RNA activating complex, polypeptide 1, 43kDa | 7974870 | −0.52596952 |
| RNF19A | ring finger protein 19A | 8152041 | −0.526515918 |
| SKIV2L2 | superkiller viralicidic activity 2-like 2 (S. cerevisiae) | 8105353 | −0.530773126 |
| ANAPC4 | anaphase promoting complex subunit 4 | 8094408 | −0.533126207 |
| − | − | 7916667 | −0.533554256 |
| NCKAP1 | NCK-associated protein 1 | 8057517 | −0.53822831 |
| DGKH | diacylglycerol kinase, eta | 7968800 | −0.538998035 |
| MARCH7 | membrane-associated ring finger (C3HC4) 7 | 8045919 | −0.550742909 |
| HOMER1 | homer homolog 1 (Drosophila) | 8112841 | −0.551657356 |
| PHF20L1 | PHD finger protein 20-like 1 | 8148358 | −0.551986952 |
| YEATS4 | YEATS domain containing 4 | 7957032 | −0.55366204 |
| CHRM3 | cholinergic receptor, muscarinic 3 | 7910915 | −0.554183212 |
| PDE3B | phosphodiesterase 3B, cGMP-inhibited | 7938629 | −0.557038965 |
| BRMS1L | breast cancer metastasis-suppressor 1-like | 7973948 | −0.55836529 |
| SNORD30 | small nucleolar RNA, C/D box 30 | 7948900 | −0.560928764 |
| ZNF84 | zinc finger protein 84 | 7960143 | −0.562597276 |
| MND1 | meiotic nuclear divisions 1 homolog (S. cerevisiae) | 8097857 | −0.5650204 |
| LOC221442 | adenylate cyclase 10 pseudogene | 8119423 | −0.565773386 |
| UBA6 | ubiquitin-like modifier activating enzyme 6 | 8100615 | −0.566611488 |
| N4BP2L2 | NEDD4 binding protein 2-like 2 | 7970907 | −0.570303348 |
| ZRANB2 | zinc finger, RAN-binding domain containing 2 | 7916969 | −0.573773594 |
| EIF5B | eukaryotic translation initiation factor 5B | 8043861 | −0.574408988 |
| NAP1L1 | nucleosome assembly protein 1-like 1 | 7965048 | −0.581711065 |
| ZNF146 | zinc finger protein 146 | 8028186 | −0.584609444 |
| BRWD3 | bromodomain and WD repeat domain containing 3 | 8173766 | −0.592331241 |
| KIAA1109 | KIAA1109 | 8097148 | −0.602191356 |
| SENP7 | SUMO1/sentrin specific peptidase 7 | 8089203 | −0.603487152 |
| FZD6 | frizzled homolog 6 (Drosophila) | 8147766 | −0.605426406 |
| CHD9 | chromodomain helicase DNA binding protein 9 | 7995583 | −0.607612535 |
| KIAA1430 | KIAA1430 | 8103979 | −0.617503882 |
| RNF217 | ring finger protein 217 | 8121825 | −0.620970732 |
| PCMTD1 | protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 | 8150714 | −0.635640315 |
| NKTR | natural killer-tumor recognition sequence | 8079079 | −0.63772807 |
| KIF23 | kinesin family member 23 | 7984540 | −0.649229354 |
| PRPF40A | PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) | 8055913 | −0.652162751 |
| − | − | 8098287 | −0.658215787 |
| ARID4A | AT rich interactive domain 4A (RBP1-like) | 7974621 | −0.661691075 |
| LUC7L3 | LUC7-like 3 (S. cerevisiae) | 8008493 | −0.663829187 |
| NIPBL | Nipped-B homolog (Drosophila) | 8104944 | −0.6642255 |
| CENPE | centromere protein E, 312kDa | 8102076 | −0.664227054 |
| BOD1L | biorientation of chromosomes in cell division 1-like | 8099410 | −0.665905703 |
| TAF1D | TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa | 7951008 | −0.668975157 |
| PIBF1 | progesterone immunomodulatory binding factor 1 | 7969390 | −0.670731182 |
| SENP6 | SUMO1/sentrin specific peptidase 6 | 8120758 | −0.675080818 |
| SMC2 | structural maintenance of chromosomes 2 | 8156982 | −0.681747538 |
| DNAJC10 | DnaJ (Hsp40) homolog, subfamily C, member 10 | 8046759 | −0.690820266 |
| ZNF638 | zinc finger protein 638 | 8042601 | −0.696757481 |
| STXBP3 | syntaxin binding protein 3 | 7903541 | −0.698824428 |
| TTK | TTK protein kinase | 8120838 | −0.699258503 |
| SCYL2 | SCY1-like 2 (S. cerevisiae) | 7957806 | −0.710364273 |
| ERBB2IP | erbb2 interacting protein | 8105681 | −0.71178458 |
| CHD1 | chromodomain helicase DNA binding protein 1 | 8113305 | −0.71533841 |
| MPP6 | membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) | 8131927 | −0.715467135 |
| C1orf27 | chromosome 1 open reading frame 27 | 7908330 | −0.715867564 |
| DNM1L | dynamin 1-like | 7954752 | −0.716232722 |
| CEP152 | centrosomal protein 152kDa | 7988537 | −0.717688618 |
| OTUD6B | OTU domain containing 6B | 8147262 | −0.735794509 |
| ATRX | alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae) | 8173673 | −0.740293061 |
| ZNF100 | zinc finger protein 100 | 8035808 | −0.741413733 |
| KIF18A | kinesin family member 18A | 7947248 | −0.743358618 |
| DEK | DEK oncogene | 8124144 | −0.744034441 |
| − | − | 8083445 | −0.766235985 |
| − | − | 8119580 | −0.77576534 |
| SDCCAG1 | serologically defined colon cancer antigen 1 | 7978866 | −0.776418378 |
| ANKRD36B | ankyrin repeat domain 36B | 8054064 | −0.777582301 |
| ANKRD26 | ankyrin repeat domain 26 | 7932637 | −0.779453671 |
| LYSMD3 | LysM, putative peptidoglycan-binding, domain containing 3 | 8113064 | −0.780972234 |
| CTAGE4 /// CTAGE6 /// LOC100142659 /// LOC441294 /// hCG_2030429 | CTAGE family, member 4 /// CTAGE family, member 6 /// CTAGE family member /// similar to CTAGE6 /// CTAGE family, member 4-like | 8136979 | −0.78257421 |
| SUCLA2 | succinate-CoA ligase, ADP-forming, beta subunit | 7971541 | −0.78881152 |
| SMC5 | structural maintenance of chromosomes 5 | 8155770 | −0.795143951 |
| POLK | polymerase (DNA directed) kappa | 8106303 | −0.814486061 |
| ERGIC2 | ERGIC and golgi 2 | 7962013 | −0.820896474 |
| RAD50 | RAD50 homolog (S. cerevisiae) | 8107942 | −0.827079801 |
| THOC2 | THO complex 2 | 8174893 | −0.836189906 |
| KTN1 | kinectin 1 (kinesin receptor) | 7974483 | −0.866627304 |
| JMJD1C | jumonji domain containing 1C | 7933877 | −0.86686842 |
| USP15 | ubiquitin specific peptidase 15 | 7956670 | −0.869012602 |
| PPP1R12A | protein phosphatase 1, regulatory (inhibitor) subunit 12A | 7965123 | −0.883024382 |
| FNBP1L | formin binding protein 1-like | 7903092 | −0.886872231 |
| SMC6 | structural maintenance of chromosomes 6 | 8050443 | −0.915161746 |
| SMC4 | structural maintenance of chromosomes 4 | 8083709 | −0.920861102 |
| ROCK2 | Rho-associated, coiled-coil containing protein kinase 2 | 8050302 | −0.924567683 |
| AKAP9 | A kinase (PRKA) anchor protein (yotiao) 9 | 8134122 | −0.935693684 |
| ZNF252 | zinc finger protein 252 | 8153935 | −0.939582046 |
| COPS2 | COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis) | 7988605 | −0.975928968 |
| GCC2 | GRIP and coiled-coil domain containing 2 | 8044236 | −1.024026926 |
| CTAGE4 /// CTAGE6 /// LOC100142659 /// LOC441294 /// hCG_2030429 | CTAGE family, member 4 /// CTAGE family, member 6 /// CTAGE family member /// similar to CTAGE6 /// CTAGE family, member 4-like | 8129560 | −1.025580319 |
| ROCK1 | Rho-associated, coiled-coil containing protein kinase 1 | 8022441 | −1.074633032 |
| FLJ45950 | FLJ45950 protein | 7952673 | −1.131057985 |