Table 2.

SNPs found in the Corynebacterium ulcerans isolates

	08-1143	KL126	KL246	KL251	KL252	KL315	KL318	KL387	KL392	FRC58	102	BR-AD22
08-1143	0	2(35)	7,293	7,304	7,300	21,271	21,258	7,330	7,337	7,585	20,538	17,757
KL126	2 (35)	0	7,291	7,290	7,290	21,263	21,256	7,323	7,326	7,579	20,536	17,758
KL246	7,293	7,291	0	0 (46)	1 (32)	17,269	17,256	5,239	5,254	9,285	16,773	16,619
KL251	7,304	7,290	0 (46)	0	1 (51)	17,281	17,266	5,259	5,270	9,294	16,784	16,635
KL252	7,300	7,290	1 (32)	1 (51)	0	17,267	17,254	5,222	5,245	9,270	16,763	16,608
KL315	21,271	21,263	17,269	17,281	17,267	0	0 (96)	16,602	16,608	16,603	1,297	12,670
KL318	21,258	21,256	17,256	17,266	17,254	0 (96)	0	16,591	16,589	16,585	1,280	12,659
KL387	7,330	7,323	5,239	5,259	5,222	16,602	16,591	0	2 (37)	9,521	16,079	16,034
KL392	7,337	7,326	5,254	5,270	5,245	16,608	16,589	2 (37)	0	9,550	16,087	16,050
FRC58	7,585	7,579	9,285	9,294	9,270	16,603	16,585	9,521	9,550	0	16,316	16,166
102	20,538	20,536	16,773	16,784	16,763	1,297	1,280	16,079	16,087	16,316	0	12,122
BR-AD22	17,757	17,758	16,619	16,635	16,608	12,670	12,659	16,034	16,050	16,166	12,122	0

SNPs of the resequenced isolates show that only very minor differences are detectable within each group of isolates. Numbers in parentheses represent the number of SNPs originally given by the SNP calling pipeline. The number in front is the number of SNPs remaining after manual curation as described in the Methods section to avoid faulty SNP calling.