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. 2014 Nov 3;5(22):11017–11028. doi: 10.18632/oncotarget.2669

Table 3. The 10 probe sets (9 genes) with the lowest coefficient of variation (CV) across all four timepoints (presurgery and 10, 20, and 45 minutes after resection) in normal colon tissue are shown above the dotted line, and 20 well-known housekeeping genes (HKG) with their CV and their rank when sorted for CV are shown below the dotted line.

Normal tissue Tumor tissue
Probe ID Gene Protein and function CV Rank Rank
1558623_at LOC729121 Hypothetical LOC729121 0.0000651769 1 22,547
227472_at DDA1 DET1 and DDB1 associated 1; may be involved in ubiquitination and subsequent proteosomal degradation 0.0000763301 2 5,095
213477_x_at EEF1A1 Eukaryotic translation elongation factor 1 alpha 1; involved in protein biosynthesis 0.000120035 3 70
206559_x_at 0.00021194 10 464
203172_at FXR2 Fragile X mental retardation, autosomal homolog 2; RNA-binding protein 0.00012495 4 5,833
202652_at APBB1 Amyloid beta (A4) precursor protein-binding, family B, member 1; transcription coregulator 0.000140598 5 22,323
209394_at ASMTL Acetylserotonin O-methyltransferase-like; unknown function 0.000153558 6 28,176
234891_at DKFZP547L112 Hypothetical protein DKFZp547L112 0.000198356 7 17,884
212986_s_at TLK2 Tousled-like kinase 2; involved in chromatin assembly 0.000208644 8 2,237
223148_at PIGS Phosphatidylinositol glycan anchor biosynthesis, class S; component of the GPI transamidase complex 0.000210952 9 24,752
210646_x_at RPL13A Ribosomal protein L13a, HKG 0.000370481 53 752
201049_s_at RPS18 Ribosomal protein S18, HKG 0.000581215 185 2,319
230125_at GUSB Glucuronidase, beta, HKG 0.000939722 647 19,340
AFFX-HSAC07/X00351_3_at ACTB Actin, beta, HKG 0.001080551 941 7,550
216457_s_at SF3A1 Splicing factor 3a, subunit 1, 120 kDa, HKG 0.001542067 2,363 890
212581_x_at GAPDH Glyceraldehyde-3-phosphate dehydrogenase, HKG 0.001735025 3,208 332
201093_x_at SDHA Succinate dehydrogenase complex, subunit A, flavoprotein (Fp), HKG 0.002533378 8,062 42,630
203135_at TBP TATA box binding protein, HKG 0.003036083 12,044 11,750
203040_s_at HMBS Hydroxymethylbilane synthase, HKG 0.003145361 12,988 6,489
1565446_at HPRT1 Hypoxanthine phosphoribosyltransferase 1, HKG 0.003323065 14,616 23,933
229165_at MRPL12 Mitochondrial ribosomal protein L12, HKG 0.003428532 15,543 12,742
224695_at C2orf29 Chromosome 2 open reading frame 29, HKG 0.00344027 15,651 6,081
211296_x_at UBC Ubiquitin C, HKG 0.003508935 16,259 2,040
235741_at PPIA Peptidylprolyl isomerase A (cyclophilin A), HKG 0.003666547 17,628 33,077
221842_s_at ZNF131 Zinc finger protein 131, HKG 0.003960494 20,273 20,072
227708_at EEF1A1 Eukaryotic translation elongation factor 1 alpha 1, HKG 0.004407467 24,160 24,765
1566191_at SUZ12 Suppressor of zeste 12 homolog (Drosophila), HKG 0.005051028 29,227 49,826
240686_x_at TFRC Transferrin receptor (p90, CD71), HKG 0.006000472 35,483 30,303
232311_at B2M Beta-2-microglobulin, HKG 0.012872315 49,756 44,528
214023_x_at TUBB2B Tubulin, beta 2B, HKG 0.019826709 52,506 53,778