Table 4.
Summary of the BES, BAC, and scaffold sequence annotations
| Sequence | BES | 017B07 | 075D16 | 112N18 | 119M23 | 136B16 | Scaffold | Total |
|---|---|---|---|---|---|---|---|---|
| DNA/EnSpm | 0.88a | – | – | – | 0.82 | – | 0.09 | 0.18 |
| DNA/hAT | 3.39 | – | 1.95 | – | – | 0.64 | 0.04 | 0.46 |
| DNA/Helitron | 0.08 | – | – | – | – | – | 0.19 | 0.13 |
| DNA/other | – | – | – | – | – | – | 0.21 | 0.14 |
| LTR/Copia | 14.15 | 0.08 | 22.00 | 6.90 | 36.85 | 14.83 | 11.73 | 13.18 |
| LTR/Gypsy | 5.62 | 0.35 | 1.73 | 10.94 | – | 7.94 | 7.15 | 6.09 |
| LTR/other | 0.03 | – | – | – | – | – | 0.22 | 0.15 |
| Non-LTR/SINE | – | 0.11 | – | – | – | – | – | 0.01 |
| Non-LTR/LINE | 1.93 | – | – | – | – | – | 1.28 | 1.02 |
| Non-LTR/RTE | 0.70 | 0.56 | 0.07 | – | – | 0.64 | 0.39 | 0.39 |
| rRNA | 1.19 | – | – | – | – | – | 0.39 | 0.36 |
| Simple repeat | 10.28 | 13.80 | 12.21 | 15.51 | 12.13 | 13.24 | 9.72 | 10.60 |
| Total repeats | 38.25 | 14.90 | 37.96 | 33.35 | 49.80 | 37.29 | 31.41 | 32.71 |
| Total genes EST-confirmed non-repetitive | 27.30 | 64.39 | 2.67 | 14.16 | – | 16.81 | 18.66 | 20.07 |
– no alignment was found, DNA class II TEs (transposons), LTR class I TEs (retrotransposons) with long terminal repeats, non-LTR class I TEs (retrotransposons) lacking long terminal repeats
aPercentage of sequence covered by alignments to particular elements