Table 4.
Amplification specificity of TMPCR and 16S rDNA-specific PCR.
Organism | Strains tested (n = 100) |
Specificity (%) | |
---|---|---|---|
TMPCRa | 16S rDNA PCRb | ||
V. cholerae O1 | 21 | 100 | 100 |
V. cholerae O139 | 16 | 100 | 100 |
V. cholerae NAG Ic | 16 | 100 | 100 |
V. cholerae NAG IId | 16 | 100 | 100 |
Other vibrios | 8 | 0 | 100 |
Gram-negative bacteria | 16 | 0 | 100 |
Gram-positive bacteria | 7 | 0 | 100 |
aThe specificity (%) = strains showing a positive amplification of expected amplicon sizes by TMPCR as having no cross-hybridization with negative controls/a total of strains tested, multiplied by 100.
bAs for 16S rDNA-specific PCR, no cross-hybridization occurred in reactions containing nuclease-free water or no DNA.
cNAG I non-O1/non-O139 growing in semisolid agar in the presence of sucrose and mannose but not arabinose.
dNAG II non-O1/non-O139 growing in semisolid agar only supplemented with sucrose.