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. 2015 Jan 15;10(1):e0115336. doi: 10.1371/journal.pone.0115336

Table 2. Overview of identified genes associated to RISC complex in C. puncticollis. (FS) frame shift; (RF) reading frame.

Contig First hit BLASTp Tribolium homologue Comparison to Tribolium
RISC
Tudor-SN Cp.comp40322_c1_seq1 hypothetical protein YQE_11841, partial [Dendroctonus ponderosae] XP_974879 E = 0.0; bits = 735
Vasa intronic gene (VIG) Cp.comp31480_c0_seq2 hypothetical protein D910_11911 [Dendroctonus ponderosae] EFA12812 E = 9e-96; bits = 301
Similar to fragile X mental retardation syndrome related protein 1 (FXMR1) Cp.comp38219_c0_seq6 hypothetical protein D910_07822, partial [Dendroctonus ponderosae] XP_969396 E = 0.0; bits = 730
p68 RNA helicase Cp.comp36480_c0_seq1 hypothetical protein YQE_12421, partial [Dendroctonus ponderosae] NP_001164095 E = 0.0; bits = 806
Translin Cp.comp40752_c0_seq1 hypothetical protein YQE_05829, partial [Dendroctonus ponderosae] EFA07522 E = 4e-105; bits = 313
Similar to translin associated factor X Cp.comp28110_c0_seq1 hypothetical protein D910_08298 [Dendroctonus ponderosae] XP_975473 E = 3e-107; bits = 333
Armitage Cp.comp39999_c0_seq2 hypothetical protein D910_08795 [Dendroctonus ponderosae] XP_969071 E = 0.0; bits = 1119
Homeless (spindle-E) Cp.comp40635_c0_seq2 hypothetical protein YQE_03529, partial [Dendroctonus ponderosae] XP_971741 E = 0.0; bits = 1300
Maelstrom Cp.comp35977_c0_seq3 hypothetical protein D910_02860, partial [Dendroctonus ponderosae] EFA02892 E = 1e-67; bits = 234
HEN1 Cp.comp39152_c0_seq16 hypothetical protein D910_04572, partial [Dendroctonus ponderosae] EEZ98969 E = 2e-145; bits = 462
RNA helicase Belle Cp.comp37673_c0_seq4 ATP-dependent RNA helicase belle [Tribolium castaneum] NP_001153721 E = 0.0; bits = 1037
PRP16, mut6 homolog Cp.comp39484_c0_seq1 hypothetical protein D910_03265 [Dendroctonus ponderosae] XP_969616 E = 0.0; bits = 2094
Gemin3 homolog Cp.comp40453_c0_seq1 hypothetical protein TcasGA2_TC003675 [Tribolium castaneum] EFA00789 E = 0.0; bits = 551
Similar to Gawky Cp.comp40223_c1_seq8 hypothetical protein YQE_12796, partial [Dendroctonus ponderosae] XP_973043 E = 0.0; bits = 1212
Staufen Cp.comp28896_c0_seq2 hypothetical protein YQE_06727, partial [Dendroctonus ponderosae] EFA11564 E = 0.0; bits = 947
Clp1 homolog (kinase) Cp.comp34766_c0_seq1 PREDICTED: similar to AGAP007701-PA [Tribolium castaneum] EFA06994 E = 0.0; bits = 673
Elp-1 Cp.comp40424_c1_seq1 hypothetical protein D910_02697 [Dendroctonus ponderosae] XP_970736 E = 3e-137; bits = 335
GLD-1 homolog Cp.comp39799_c0_seq20 held out wings [Tribolium castaneum] NP_001164152 E = 0.0; bits = 649
ACO-1 homolog Cp.comp40176_c0_seq1 PREDICTED: similar to aconitase [Tribolium castaneum] XP_972101 E = 0.0; bits = 1544