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. 2015 Jan 15;10(1):e0115336. doi: 10.1371/journal.pone.0115336

Table 3. Overview of identified genes associated to RNAi in C. puncticollis. (FS) frame shift; (RF) reading frame.

Contig First hit BLASTp Tribolium homologue Comparison to Tribolium
dsRNA uptake
Scavenger receptor SR-C-like protein Cp.comp35050_c0_seq1 PREDICTED: similar to scavenger receptor SR-C-like protein [Tribolium castaneum] XP_001812043 E = 4e-150; bits = 455
Eater Cp.comp38230_c1_seq1 hypothetical protein D910_03817 [Dendroctonus ponderosae] XP_969372 E = 1e-43; bits = 171
SID1-related C precursor Cp.comp38247_c0_seq1 hypothetical protein D910_05186 [Dendroctonus ponderosae] NP_001099128 E = 0.0; bits = 963
SID1-related C precursor Cp.comp38991_c0_seq20 hypothetical protein D910_05186 [Dendroctonus ponderosae] NP_001099128 E = 5e-143; bits = 449
FBX011 Cp.comp39489_c1_seq2 hypothetical protein D910_09724 [Dendroctonus ponderosae] EFA07112 E = 0.0; bits = 1677
CG4966 = orthologous to the Hermansky-Pudlak Syndrome4 Cp.comp40396_c0_seq2 hypothetical protein TcasGA2_TC002372 [Tribolium castaneum] XP_969589 E = 0.0; bits = 632
Antiviral
Ars2 Cp.comp36546_c1_seq2 hypothetical protein YQE_07634, partial [Dendroctonus ponderosae] EFA00685 E = 0.0; bits = 625
CG4572 Cp.comp36338_c0_seq1 PREDICTED: similar to salivary/fat body serine carboxypeptidase [Tribolium castaneum] XP_969249 E = 0.0; bits = 717
Egghead Cp.comp38318_c0_seq1 PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum] XP_975496 E = 0.0; bits = 731
ninaC Cp.comp38683_c0_seq2 Neither inactivation nor afterpotential protein C [Acromyrmex echinatior] XP_968286 E = 0.0; bits = 1112
Nucleases
Snipper = Eri1 Cp.comp37539_c0_seq1 Snipper [Tribolium castaneum] NP_001107798 E = 1e-91; bits = 281
Nibbler Cp.comp36632_c0_seq4 hypothetical protein TcasGA2 TC002596 [Tribolium castaneum] EEZ99816 E = 0.0; 952bits
Sdn1-like Cp.comp36451_c0_seq1 hypothetical protein D910_06808 [Dendroctonus ponderosae] EFA00159 E = 0.0; bits = 942
dsRNAse Cp.comp35928_c0_seq3 hypothetical protein YQE_04599, partial [Dendroctonus ponderosae] XP_970494 E = 7e-119; bits = 363
Exosome Cp.comp37176_c0_seq1 PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum] XP_966807 E = 0.0; bits = 711
Poly(A) polymerase Cp.comp37990_c0_seq4 hypothetical protein YQE_12311, partial [Dendroctonus ponderosae] EFA00912 E = 0.0; bits = 862