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. 2013 Jul 31;15(6):890–905. doi: 10.1093/bib/bbt052

Table 1:

Positions 1 through 16 of the table of vectors for Inline graphic from Inline graphic and Inline graphic from Inline graphic, aligned with position

2mers position i Inline graphic1 Inline graphic2 Inline graphic3 Inline graphic4 Inline graphic5 Inline graphic6 Inline graphic7 Inline graphic8 Inline graphic9 Inline graphic10 Inline graphic11 Inline graphic12 Inline graphic13 Inline graphic14 Inline graphic15 Inline graphic16
Inline graphic 0 Inline graphic 0 Inline graphic 0 0 Inline graphic Inline graphic 0 Inline graphic 0 Inline graphic Inline graphic 0 Inline graphic 0
Inline graphic 0 Inline graphic 0 0 0 0 Inline graphic Inline graphic 0 Inline graphic 0 0 Inline graphic 0 0 0
VM 0 Inline graphic 0 Inline graphic 0 0 Inline graphic Inline graphic 0 Inline graphic 0 Inline graphic Inline graphic 0 Inline graphic 0

The elements of combined vector M by index are also shown. Frequencies of each 2mer are made by normalizing the occurrences of each 2mer in S1 and S2, respectively, by the total number of 2mer occurrences in each sequence.