Table 1. SNP-based haplotypes of the Nigerian family with MJD compared with the Joseph (Flores) and Machado (São Miguel) lineages.
| dbSNP ID | refSNP (HGVS)a | Distance from the (CAG)n (bp)b | Machado lineage | Joseph lineage | Nigerian family |
|---|---|---|---|---|---|
| rs12590497 | chr14:g.92549632C>A | 12 352 | G | T | G/T |
| rs16999141 | chr14: g.92549586G>A | 12 306 | T | T | T |
| rs10146519 | chr14: g.92548896A>C | 11 616 | T | G | T/G |
| rs1048755 | chr14:g.92548785C>T | 11 505 | G | A | G/A |
| rs12586535 | chr14: g.92538529G>A | 1249 | C | T | T |
| rs12586471 | chr14: g.92538405A>G | 1125 | T | C | C |
| rs56268847 | chr14: g.92538168T>C | 888 | A | A | A |
| rs10467858 | chr14: g.92537785C>T | 505 | G | A | A |
| rs10467857 | chr14: g.92537743G>C | 463 | G | G | G |
| rs10467856 | chr14: g.92537732A>G | 452 | T | C | C |
| (CTG)exp g.92537355_92537357(87) | |||||
| rs12895357 | chr14:g.92537354C>G | 1 | G | C | C |
| rs7158733 | chr14:g.92537223G>T | 132 | C | A | A |
| rs3092822 | chr14: g.92537163T>G | 192 | A | C | C |
| rs77086230 | chr14: g.92536013G>A | 1 342 | C | C | C |
| rs79316375 | chr14: g.92535391G>A | 1964 | C | C | C |
| rs8004149 | chr14: g.92534915C>T | 2440 | G | A | A |
| rs111735934 | chr14: g.92534883C>T | 2472 | A | G | G |
| rs181752420 | chr14: g.92534779G>A | 2576 | C | C | C |
| rs7142326 | chr14: g.92534741T>C | 2614 | G | G | G |
| rs74071847 | chr14: g.92534673G>A | 2742 | C | C | C |
a
Genome Reference Consortium GRCh37.p10 (hg19 database).
b
The four most distant SNPs are outside the 4 kb sequenced region.