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. 2014 Nov 17;32(2):495–509. doi: 10.1093/molbev/msu320

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© The Author 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 4. — Identification of two different haplotype-blocks (b5, b12) on 3R. Singletons specific to either haplotype, b5 (upper panel), or b12 (lower panel), were identified from 29 haplotypes. In a sliding-window analysis, frequency changes of singleton-windows (inferred from Pool-Seq) are plotted for three different comparisons of the base to generation F15, F37, and F59. Dashed lines present thresholds for haplotype-block identification for the respective generations based on mean frequency changes of the top 2,000 CMH candidates (see Materials and Methods). Short solid lines above indicate areas of identified haplotype-blocks.