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. 2014 Nov 17;32(2):495–509. doi: 10.1093/molbev/msu320

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© The Author 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 6. — Frequency change of singleton-SNP windows in experimental and simulated data. Dots show the frequency changes from the base to respective generation (F15, F37, and F59) of the singleton-SNP windows used for haplotype-block identification (see Materials and Methods). The left panel shows the 99% quantile and right panel the maximum frequency change of all singleton-SNP windows. Different colors show the experimental data (Exp) and the neutral simulations (Sim1–3: N_e = 250, Sim4–5: N_e = 150, see Materials and Methods, supplementary table S1, Supplementary Material online). The gray dots joined by the dashed line represent the thresholds used for haplotype-block identification.