TABLE 2.
Relative enthalpy-based sequence distance from each V3 sequence to every other one in the list of published isolatesa
| Tropism | Isolate (GenBank accession no.) | Sequence | Distance | 1/0 R5 | Index R5 | Value R5 | 1/0 X4 | Index X4 | Value X4 |
|---|---|---|---|---|---|---|---|---|---|
| R5 | R5-S123 (AF153176) | TGTACAAGAC | 0.021858 | 1 | 3 | 3 | 0 | 3 | 0 |
| R5 | R5-S194 (AF153164) | TGTATAAGAC | 0.021858 | 1 | 4 | 4 | 0 | 4 | 0 |
| R5 | R5-S083 (AF153189) | TGTACAAGAC | 0.027322 | 1 | 5 | 5 | 0 | 5 | 0 |
| R5 | R5-98ZABLM84 (DQ235618) | TGTATAAGAA | 0.027322 | 1 | 6 | 6 | 0 | 6 | 0 |
| X4 | X4-CHN19 | TGTACAAGAC | 0.027322 | 0 | 7 | 0 | 2.3 | 7 | 16.1 |
| R5 | R5-A125 (AY253304) | TGTGTAAGAC | 0.027322 | 1 | 8 | 8 | 0 | 8 | 0 |
| R5 | R5-C054 (AF153155) | TGTACAAGAC | 0.027322 | 1 | 9 | 9 | 0 | 9 | 0 |
| R5 | R5-93MW_965 (AY713413) | TGTACAAGAC | 0.027322 | 1 | 10 | 10 | 0 | 10 | 0 |
| R5 | R5-S071 (AF153162) | TGTACAAGAC | 0.027322 | 1 | 11 | 11 | 0 | 11 | 0 |
| R5 | R5-TV002 (AF254767) | TGTACAAGAC | 0.027322 | 1 | 12 | 12 | 0 | 12 | 0 |
| X4 | X4-CTSC2 (AY043176) | TGTACAAGAC | 0.027322 | 0 | 13 | 0 | 2.3 | 13 | 29.9 |
| R5 | R5-TV019 (AF254783) | TGTACAAGAC | 0.027322 | 1 | 14 | 14 | 0 | 15 | 0 |
| R5 | R5-C022 (AF153186) | TGTACAAGAC | 0.027322 | 1 | 15 | 15 | 0 | 15 | 0 |
| R5 | R5-TV014A (AF391247) | TGCACAAGAC | 0.027322 | 1 | 16 | 16 | 0 | 16 | 0 |
| R5 | R5-99ZASW5 (AY170658) | TGTACAAGAC | 0.027322 | 1 | 17 | 17 | 0 | 17 | 0 |
| R5 | R5-99ZASW38 (AY170667) | TGTACAAGGC | 0.027322 | 1 | 18 | 18 | 0 | 18 | 0 |
| R5 | R5-99ZASW38 (AY505002) | TGTACAAGGC | 0.027332 | 1 | 19 | 19 | 0 | 19 | 0 |
| R5 | R5-99ZATM19 (DQ235629) | TGTACAAGAC | 0.027322 | 1 | 20 | 20 | 0 | 20 | 0 |
| R5 | R5-98ZA502 (AY158534) | TGTACAAGAC | 0.032787 | 1 | 21 | 21 | 0 | 21 | 0 |
| R5 | R5-S147 (AF153169) | TGTACAAGAC | 0.032787 | 1 | 22 | 22 | 0 | 22 | 0 |
| R5 | R5-S171 (AF153150) | TGCACTAGAC | 0.032787 | 1 | 23 | 23 | 0 | 23 | 0 |
| R5 | R5-01PB15ZA (AY510062) | TGTACAAGGC | 0.032787 | 1 | 24 | 24 | 0 | 24 | 0 |
| X4 | X4-C070 (AF153143) | TGTACAAGGC | 0.032787 | 0 | 25 | 0 | 2.3 | 25 | 57.5 |
| R5 | R5-C109 (AF153142) | TGTACAAGAC | 0.032787 | 1 | 26 | 26 | 0 | 26 | 0 |
| R5 | R5-97ZAPET100 (DQ235617) | TGTACAAGAC | 0.032787 | 1 | 27 | 27 | 0 | 27 | 0 |
| R5 | R5-01PB21ZA (AY510065) | TGTACAAGAC | 0.032787 | 1 | 28 | 28 | 0 | 28 | 0 |
| R5 | R5-S059 (AF153151) | TGTACAAGAC | 0.038251 | 1 | 29 | 29 | 0 | 29 | 0 |
| R5 | R5-TV005 (AF254770) | TGTACAAGAC | 0.038251 | 1 | 30 | 30 | 0 | 30 | 0 |
| R5 | R5-TC25 (AY265945) | TGTACAAGAC | 0.038251 | 1 | 31 | 31 | 0 | 31 | 0 |
a
Highest scores for various HIV-1 isolates to the reference (line 1), with “Distance” value = 0 and sorted by increasing values; columns as detailed in the text.