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. 2014 Dec 13;7:32. doi: 10.1186/s13040-014-0032-2

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© Laurila et al.; licensee BioMed Central. 2014

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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The scheme of the SNP-expression analysis steps. The description of each step includes also the numbers of the remaining gene/transcript/exon probesets after the filtering. The numbers for the SNP array are for the data set with all the samples. In the analysis of a single group of cells (hESCs or hiPSCs) the number of SNPs after the second filtering step is slightly lower due to the lack of the genotypic variation.