Table 3.
Trinity assembly metrics for A. glabripennis transcripts obtained separately from midgut contents and from intact midgut transcriptome libraries (see Methods for more information)
| Source | Number of transcripts | Minimum transcript length (nt) | N80 transcript length (nt) | N50 transcript length (nt) | N20 transcript length (nt) | Maximum transcript length (nt) | Total length of assembled transcripts (nt) |
|---|---|---|---|---|---|---|---|
| Midgut contents | 161,117 | 200 | 323 | 684 | 1,945 | 31,383 | 90.09 Mb |
| Midgut contents: Microbial | 7,952 | 200 | 245 | 334 | 546 | 5,049 | 2.69 Mb |
| Midgut contents: Bacterial | 3,084 | 200 | 247 | 363 | 653 | 5,049 | 1.12 Mb |
| Midgut contents: Fungal | 4,868 | 200 | 242 | 316 | 484 | 2,259 | 1.58 Mb |
| Intact midgut | 61,812 | 200 | 272 | 592 | 1,937 | 26,118 | 30.6 Mb |
| Intact midgut: Microbial | 3,167 | 200 | 266 | 492 | 1,271 | 14,152 | 1.42 Mb |
| Intact midgut: Bacterial | 2,154 | 200 | 294 | 548 | 1,445 | 14,152 | 1.05 Mb |
| Intact midgut: Fungal | 1,013 | 200 | 234 | 353 | 799 | 3,643 | 0.36 Mb |