Table 5.
Number of transcripts per million mapped reads (TPM) for bacterial and fungal transcripts assembled from the midgut contents and intact midgut libraries
| Class | COG assignment | TPM midgut contents | TPM intact midgut |
|---|---|---|---|
| Actinobacteria | Amino acid transport and metabolism | 0 | 0.72 |
| Carbohydrate transport and metabolism | 7.43 | 2.04 | |
| Cell motility and secretion | 0 | 1.08 | |
| Coenzyme metabolism | 0 | 1.28 | |
| Energy production and conversion | 0 | 2.24 | |
| Function unknown | 0 | 2.67 | |
| Lipid metabolism | 0 | 1.08 | |
| Nucleotide transport and metabolism | 0 | 2.01 | |
| Alphaproteobacteria | Amino acid transport and metabolism | 3.28 | 0 |
| Cell envelope biogenesis, outer membrane | 6.47 | 0 | |
| Coenzyme metabolism | 3.03 | 0 | |
| Energy production and conversion | 5.04 | 0 | |
| General function prediction only | 10.17 | 0 | |
| Bacilli | Amino acid transport and metabolism | 0 | 326.88 |
| Carbohydrate transport and metabolism | 558.13 | 492.9 | |
| Cell envelope biogenesis, outer membrane | 1585.16 | 334.75 | |
| Cell motility and secretion | 1569.88 | 41.89 | |
| Coenzyme metabolism | 0 | 157 | |
| Energy production and conversion | 0 | 232.11 | |
| General function prediction only | 30.88 | 568.52 | |
| Inorganic ion transport and metabolism | 0 | 257.6 | |
| Lipid metabolism | 0 | 95.11 | |
| Nucleotide transport and metabolism | 0 | 214.12 | |
| Secondary metabolites biosynthesis, transport, and catabolism | 0 | 86.14 | |
| Bacteroidetes | Energy production and conversion | 1.51 | 0 |
| Function unknown | 3.47 | 0 | |
| Betaproteobacteria | Coenzyme metabolism | 1.94 | 0 |
| Cell envelope biogenesis, outer membrane | 21.71 | 0 | |
| Clostridia | Function unknown | 342.46 | 0 |
| Gammaproteobacteria | Amino acid transport and metabolism | 105.84 | 1.11 |
| Carbohydrate transport and metabolism | 147.84 | 0.33 | |
| Cell envelope biogenesis, outer membrane | 304.28 | 1.96 | |
| Cell motility and secretion | 111.13 | 0 | |
| Coenzyme metabolism | 49.54 | 0 | |
| Defense mechanisms | 20.49 | 1.36 | |
| Energy production and conversion | 168.14 | 1.17 | |
| Function unknown | 189.35 | 0.24 | |
| General function prediction only | 187.36 | 1.94 | |
| Inorganic ion transport and metabolism | 185.12 | 0 | |
| Lipid metabolism | 15.69 | 0.23 | |
| Nucleotide transport and metabolism | 81.51 | 0 | |
| Saccharomycetes | Amino acid transport and metabolism | 172.97 | 0 |
| Carbohydrate transport and metabolism | 106.88 | 0.33 | |
| Cell motility | 5.21 | 0 | |
| Cell wall/membrane/envelope biogenesis | 107.45 | 0 | |
| Chromatin structure and dynamics | 32.59 | 0 | |
| Coenzyme transport and metabolism | 17.03 | 0 | |
| Defense mechanisms | 98.79 | 0 | |
| Energy production and conversion | 64.95 | 0 | |
| Extracellular structures | 93.48 | 0 | |
| Function unknown | 156.44 | 0 | |
| General function prediction only | 348.77 | 0 | |
| Inorganic ion transport and metabolism | 193.37 | 0 | |
| Lipid transport and metabolism | 85.25 | 0 | |
| Nucleotide transport and metabolism | 34.03 | 0.96 | |
| Sordariomycetes | Amino acid transport and metabolism | 10.10 | 0 |
| Carbohydrate transport and metabolism | 7.40 | 0 | |
| Cell wall/membrane/envelope biogenesis | 1.47 | 0 | |
| Chromatin structure and dynamics | 5.63 | 0 | |
| Coenzyme transport and metabolism | 1.02 | 0 | |
| Energy production and conversion | 8.14 | 0 | |
| Function unknown | 0.56 | 2.26 | |
| General function prediction only | 14.59 | 0 | |
| Inorganic ion transport and metabolism | 8.62 | 0 | |
| Lipid transport and metabolism | 1.47 | 0 | |
| Nucleotide transport and metabolism | 3.35 | 0 | |
| Secondary metabolites biosynthesis, transport and catabolism | 1.65 | 0 |
Class-level taxonomic assignments and COG (Clusters of Orthologous Genes) functional assignments are indicated.