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. 2015 Jan 20;5:785. doi: 10.3389/fmicb.2014.00785

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Copyright © 2015 House, Pellegrini and Fitz-Gibbon.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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NJ phylogram, starting with the 143 original taxa, limited to only the 23 taxa found in the agreement subtrees for the 100 replicate trees formed using iterations of six predicted orthologs. Bold lines show the part of the tree that is found in all 18 agreement subtrees. “Bootstrap values” shown are the number of times a node is found when NJ trees are formed using these taxa and the 100 replicate gene order distances. Actinobacteria are shown in green and Firmicutes are shown in blue, while the γ-Proteobacteria shown in gray.