Figure 9.

Midpoint-rooted NJ phylogram, starting with 172 representative taxa, limited to only the 56 taxa found in the agreement subtrees for the 100 replicate trees formed using iterations of five predicted orthologs with the same distance equation as before, which ends up functionally equivalent to using D′ = −ln(1-D). “Bootstrap values” shown are the number of times a node is found when NJ trees are formed using these taxa and the 100 replicate gene order distances with ^* representing a bootstrap value of 100.