Table 3.
Nucleotide diversity by chromosome
| Chromosome | Homozygous sites | Heterozygous sites | π |
|---|---|---|---|
| chr1 | 112,544,959 | 485,712 | 0.0043 |
| chr10 | 19,502,766 | 67,127 | 0.0034 |
| chr10_random | 181,773 | 748 | 0.0041 |
| chr11 | 20,339,491 | 68,262 | 0.0033 |
| chr11_random | 205,478 | 795 | 0.0039 |
| chr12 | 19,966,665 | 77,365 | 0.0039 |
| chr12_random | 142,337 | 627 | 0.0044 |
| chr13 | 15,608,448 | 63,230 | 0.0040 |
| chr13_random | 2,273,196 | 6,948 | 0.0030 |
| chr14 | 15,783,392 | 62,881 | 0.0040 |
| chr14_random | 119,916 | 586 | 0.0049 |
| chr15 | 13,395,570 | 47,525 | 0.0035 |
| chr15_random | 336,675 | 1,356 | 0.0040 |
| chr16_random | 28,278 | 132 | 0.0046 |
| chr17 | 10,789,469 | 43,477 | 0.0040 |
| chr17_random | 69,369 | 290 | 0.0042 |
| chr18 | 11,093,387 | 30,844 | 0.0028 |
| chr18_random | 393,813 | 1,922 | 0.0049 |
| chr19 | 10,638,978 | 41,233 | 0.0039 |
| chr19_random | 61,004 | 162 | 0.0026 |
| chr1A | 70,419,613 | 301,663 | 0.0043 |
| chr1A_random | 429,913 | 1,856 | 0.0043 |
| chr1B | 900,172 | 4,219 | 0.0047 |
| chr1B_random | 100,455 | 761 | 0.0075 |
| chr1_random | 150,801 | 806 | 0.0053 |
| chr2 | 149,097,369 | 652,060 | 0.0044 |
| chr20 | 14,291,352 | 57,186 | 0.0040 |
| chr20_random | 138,194 | 682 | 0.0049 |
| chr21 | 5,425,030 | 24,579 | 0.0045 |
| chr21_random | 1,777,800 | 4,856 | 0.0027 |
| chr22 | 2,908,707 | 11,322 | 0.0039 |
| chr22_random | 657,788 | 3,832 | 0.0058 |
| chr23 | 5,370,519 | 23,530 | 0.0044 |
| chr23_random | 370,728 | 2,169 | 0.0058 |
| chr24 | 7,044,699 | 31,458 | 0.0044 |
| chr24_random | 74,717 | 253 | 0.0034 |
| chr25 | 1,142,233 | 4,993 | 0.0044 |
| chr25_random | 345,747 | 2,115 | 0.0061 |
| chr26 | 4,582,739 | 19,099 | 0.0042 |
| chr26_random | 1,375,049 | 7,314 | 0.0053 |
| chr27 | 3,929,203 | 14,589 | 0.0037 |
| chr27_random | 187,008 | 875 | 0.0047 |
| chr28 | 4,923,374 | 18,553 | 0.0038 |
| chr28_random | 158,967 | 1,285 | 0.0080 |
| chr2_random | 408,633 | 1,750 | 0.0043 |
| chr3 | 110,159,365 | 497,976 | 0.0045 |
| chr3_random | 850,964 | 4,677 | 0.0055 |
| chr4 | 65,570,862 | 294,828 | 0.0045 |
| chr4A | 18,959,367 | 64,240 | 0.0034 |
| chr4A_random | 68,624 | 262 | 0.0038 |
| chr4_random | 4,413,118 | 21,779 | 0.0049 |
| chr5 | 58,574,618 | 240,015 | 0.0041 |
| chr5_random | 1,912,995 | 11,030 | 0.0057 |
| chr6 | 33,425,145 | 73,863 | 0.0022 |
| chr6_random | 1,513,279 | 8,220 | 0.0054 |
| chr7 | 35,848,910 | 146,136 | 0.0041 |
| chr7_random | 205,374 | 1,023 | 0.0050 |
| chr8 | 25,953,825 | 94,369 | 0.0036 |
| chr8_random | 4,504,789 | 14,345 | 0.0032 |
| chr9 | 24,645,966 | 100,108 | 0.0040 |
| chr9_random | 121,289 | 669 | 0.0055 |
| chrLG2 | 27,825 | 241 | 0.0086 |
| chrLG5 | 1,309 | 15 | 0.0113 |
| chrLGE22 | 781,559 | 2,626 | 0.0033 |
| chrLGE22_random | 75,448 | 170 | 0.0022 |
| chrUn | 7,431,999 | 41,937 | 0.0056 |
| chrZ | 68,235,778 | 9,906 | 0.0001 |
| chrZ_random | 2,178,358 | 2,162 | 0.0010 |
| chrUn2 | 21,894,126 | 153,065 | 0.0069 |