Table 5.

SNP sites discovered by comparison to the honeycreeper reference. Filtered for qual > 30 and depth >6

Sample	Positions with known genotype	Heterozygous sites	Sites with non-reference allele	Private non-reference alleles
Nihoa_Finch_1	93,646	2,864	91,038	15,715
Nihoa_Finch_2	110,844	4,137	108,297	30,168
Iiwi	15,800	291	12,685	524
Palila_1	17,511	571	14,580	841
Amakihi	50,489	2,202	22029	3,587
Palila_2	25,795	299	22,529	1,664