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. 2015 Jan 20;10(1):e0116100. doi: 10.1371/journal.pone.0116100

Table 3. HIV incidence stratified by duration of time in study follow up, and (where data were available) by study year.

CRC and study population Total PY HIV cases detected HIV incidence 95% CI p value *
HIV discordant couples
Kigali, Rwanda: male negative
 First 3 months of follow up 238 17 7.2 (4.2, 11.5) 0.003
 >3 months of follow up 1615 47 2.9 (2.1, 3.9)
 2002–2006 947 38 4.0 (2.8, 5.5) 0.20
 2007–2011 896 26 2.9 (1.9, 4.3)
Kigali, Rwanda: female negative
 First 3 months of follow up 219 10 4.6 (2.2, 8.4) 0.08
 >3 months of follow up 1494 35 2.3 (1.6, 3.3)
 2002–2006 863 19 2.2 (1.3, 3.4) 0.27
 2007–2011 842 26 3.1 (2.0, 4.5)
Lusaka, Zambia: male negative
 First 3 months of follow up 404 39 9.7 (6.9, 13.2) 0.02
 >3 months of follow up 2979 187 6.3 (5.4, 7.2)
 2003–2006 1152 75 6.5 (5.1, 8.2) 0.67
 2007–2011 1058 64 6.1 (4.7, 7.7)
Lusaka, Zambia: female negative
 First 3 months of follow up 341 51 15.0 (11.1, 19.7) <0.001
 >3 months of follow up 2520 201 8.0 (6.9, 9.2)
 –2006 848 91 10.7 (8.6, 13.2) 0.001
 2007–2011 741 44 5.9 (4.3, 8.0)
Ndola, Zambia: male negative
 First 3 months of follow up 99 6 6.1 (2.2, 13.2) 0.96
 >3 months of follow up 479 29 6.1 (4.1, 8.7)
 2004–2007 290 23 7.9 (5.0, 11.9) 0.07
 2008–2011 284 12 4.2 (2.2, 7.4)
Ndola, Zambia: female negative
 First 3 months of follow up 79 15 19.1 (10.7, 31.5) 0.02
 >3 months of follow up 322 28 8.7 (5.8, 12.6)
 2004–2007 168 23 13.7 (8.7, 20.5) 0.14
 2008–2011 231 20 8.7 (5.3, 13.4)
Masaka, Uganda: male negative (excluding females on ART)
 First 3 months of follow up 127 3 2.4 (0.8, 7.4) 0.39
 >3 months of follow up 1017 41 4.0 (3.0, 5.5)
 2006–2008 442 20 4.5 (2.9, 7.0) 0.36
 2009–2011 701 24 3.4 (2.3, 5.1)
Masaka, Uganda: female negative (excluding males on ART)
 First 3 months of follow up 70 4 5.8 (2.2, 15.3) 0.64
 >3 months of follow up 445 20 4.5 (2.9, 7.0)
 2006–2008 150 10 6.7 (3.6, 12.4) 0.19
 2009–2011 365 14 3.8 (2.3, 6.5)
Entebbe, Uganda: male negative
 First 3 months of follow up 61 2 3.3 (0.8, 13.2) 0.36
 >3 months of follow up 284 4 1.4 (0.5, 3.7)
Entebbe, Uganda: female negative
 First 3 months of follow up 72 2 2.8 (0.7, 11.1) 0.89
 >3 months of follow up 344 9 2.6 (1.4, 5.0)
Men who have sex with men
Nairobi, Kenya
 First 3 months of follow up 64 5 7.8 (3.2, 18.7) 0.42
 >3 months of follow up 274 14 5.1 (3.0, 8.6)
Kilifi, Kenya
 First 3 months of follow up 94 15 16.0 (9.6, 26.5) <0.001
 >3 months of follow up 829 43 5.2 (3.8, 7.0)
 2005–2008 304 25 8.2 (5.6–12.2) 0.49
 2009–2012 692 48 6.9 (5.2–9.2)
At-risk women
Cape Town, South Africa: Sexually active women
 First 3 months of follow up 76 4 5.2 (2.0, 14.0) 0.18
 >3 months of follow up 207 4 1.9 (0.7, 5.1)
Rustenburg, South Africa: Sexually active women
 First 3 months of follow up 65 8 12.3 (6.2, 24.7) 0.28
 >3 months of follow up 149 11 7.4 (4.1, 13.4)
Fishing Community members
Masaka, Uganda (2012–2013 cohort)
 First 3 months of follow up 119 9 7.6 (3.9,14.6) 0.25
 >3 months of follow up 383 18 4.7 (3.0,7.5)
Masaka & Entebbe, Uganda (2009–2010 cohort)
 First 6 months of follow up ** 417 23 5.5 (3.7, 8.3) 0.28
 >6 months of follow up 803 33 4.1 (2.9, 5.8)

* Comparing HIV incidence in the first three months to HIV incidence in subsequent months of follow up and HIV incidence in the first set of calendar years indicated to the subsequent set of years, where data were available

** First return visit for this cohort was at six months post enrollment