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. Author manuscript; available in PMC: 2016 Jan 15.
Published in final edited form as: Methods. 2014 Nov 6;72:29–40. doi: 10.1016/j.ymeth.2014.10.032
Used by Description URL
BWA Human genome sequence http://wang.wustl.edu/MeDIP-MRE/hg19.fa.gz
methylQA Chromosome size file http://wang.wustl.edu/MeDIP-MRE/ann/hg19.size
CpG sites file http://wang.wustl.edu/MeDIP-MRE/ann/CpG.bed.gz
3 MRE enzyme fragment file http://wang.wustl.edu/MeDIP-MRE/ann/TriMRE_frags.bed
5 MRE enzyme fragment file http://wang.wustl.edu/MeDIP-MRE/ann/FiveMRE_frags.bed
methylMnM CpG sites in 500bp window http://wang.wustl.edu/MeDIP-MRE/ann/num500_allcpg_hg19.bed
3 MRE enzyme cut sites in 500bp window http://wang.wustl.edu/MeDIP-MRE/ann/num500_Three_mre_cpg_hg19.bed
5 MRE enzyme cut sites in 500bp window http://wang.wustl.edu/MeDIP-MRE/ann/num500_Five_mre_cpg_hg19.bed
methylCRF Model file http://methylcrf.wustl.edu/h1es_mdl.tgz
Data files http://methylcrf.wustl.edu/hg19/hg19_gdat.tgz
3 MRE enzyme fragment file http://methylcrf.wustl.edu/hg19/MRE_frags/MRE_3enz_4_6000.bed
5 MRE enzyme fragment file http://methylcrf.wustl.edu/hg19/MRE_frags/MRE_5enz_4_6000.bed