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. Author manuscript; available in PMC: 2016 Jan 31.
Published in final edited form as: Aquat Toxicol. 2014 Dec 19;159:156–166. doi: 10.1016/j.aquatox.2014.12.017

Table 1.

Genes utilized to assess NDL PCB mediated differences in New Bedford Harbor and Scorton Creek Atlantic killifish.

Gene Name Gene
Symbol
Accession
Number
Forward/Reverse Primers Probe
Ryanodine Receptor 1 ryr1 a gccgttcggtaagcagtagt
cctctgaagctgctcacaaa
120
Ryanodine Receptor 2 ryr2 KJ955487 agatgctgatcgcttccttca
gcactgagaggagataggggaga
71
Ryanodine Receptor 3 ryr3 a tacctgggtcgcattgaaa
tcgctgatctcgaagtagacc
44
L-type Voltage Gated Ca2+ Channel,
subunit 1αS
cav1.1 KJ955488 cctcaaacgttgaaacggtga
gaaacagttctggctagaagagagtg
89
FK506-Binding Protein 1A, 12kDa fkbp12 a aaagtcttcgactcgtcgaggt
ggccgacactcatctgagcta
52
Junctophilin 1 jph1 KJ955489 ctcgctgtctgagtggaagttg
cagagcaacggcgcagtt
52
Homer 1 homer1 KJ955490 acgacatctgcgactccacc
cccagtgctttgtcatggc
106
GST mu gst-mu AY725220 ggacgaaaaggtcagagtgg
acatcctcacaaagccgttt
22
Mechanistic Target of Rampamycin mtor a acctccatagcgttggtcag
gaagttccccgaaaagatcc
153
Sacrco/endoplasmic Reticulum
Calcium ATPase, 2
serca2 U58326 cacgctgaccaccaatca
atcccgctccgctttatc
112
Cardiac Phospholamban pln CV817790 cgtcgagcgtctcagatcg
gcagatgaggatgagcgtgaa
128
N-methyl-D-aspartate Glutamate
Receptor 1
nmdar1 KJ955491 cgcaccttctcctattccag
agatgccctcaccttgtcat
2
Ribosomal Protein L8 rpl8 DQ066926 gcccagctgaacattggta
caggcagcagatgatggtt
96
Ribosomal Protein S20 rps20 CN984003 cgcatgccaaccaagact
gaagcgatcccaggttttg
9
β-actin β-actin DR046767 ggccagaaggacagctatgt
tggggtacttcagggtcaag
165
Elongation Factor 1 alpha ef1α AY430091 tcaccatcgacatcgctct
gcatcgatgatggtcacgta
54
a

Gene sequences provided by S. Karchner; WHOI